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<article xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:oasis="http://docs.oasis-open.org/ns/oasis-exchange/table" xml:lang="en" dtd-version="3.0">
  <front>
    <journal-meta><journal-id journal-id-type="publisher">GI</journal-id><journal-title-group>
    <journal-title>Geoscientific Instrumentation, Methods and Data Systems</journal-title>
    <abbrev-journal-title abbrev-type="publisher">GI</abbrev-journal-title><abbrev-journal-title abbrev-type="nlm-ta">Geosci. Instrum. Method. Data Syst.</abbrev-journal-title>
  </journal-title-group><issn pub-type="epub">2193-0864</issn><publisher>
    <publisher-name>Copernicus Publications</publisher-name>
    <publisher-loc>Göttingen, Germany</publisher-loc>
  </publisher></journal-meta>
    <article-meta>
      <article-id pub-id-type="doi">10.5194/gi-7-317-2018</article-id><title-group><article-title>Neutral temperature and atmospheric water vapour retrieval from spectral fitting of auroral and airglow emissions</article-title><alt-title>Temperature retrieval from spectral fitting of atmospheric emissions</alt-title>
      </title-group><?xmltex \runningtitle{Temperature retrieval from spectral fitting of atmospheric emissions}?><?xmltex \runningauthor{J.~M.~Chadney and D.~K.~Whiter}?>
      <contrib-group>
        <contrib contrib-type="author" corresp="yes" rid="aff1">
          <name><surname>Chadney</surname><given-names>Joshua M.</given-names></name>
          <email>j.m.chadney@soton.ac.uk</email>
        <ext-link>https://orcid.org/0000-0002-5174-2114</ext-link></contrib>
        <contrib contrib-type="author" corresp="no" rid="aff1">
          <name><surname>Whiter</surname><given-names>Daniel K.</given-names></name>
          
        <ext-link>https://orcid.org/0000-0001-7130-232X</ext-link></contrib>
        <aff id="aff1"><institution>Department of Physics and Astronomy, University of Southampton,  SO17 1BJ, Southampton, UK</institution>
        </aff>
      </contrib-group>
      <author-notes><corresp id="corr1">Joshua M. Chadney (j.m.chadney@soton.ac.uk)</corresp></author-notes><pub-date><day>30</day><month>November</month><year>2018</year></pub-date>
      
      <volume>7</volume>
      <issue>4</issue>
      <fpage>317</fpage><lpage>329</lpage>
      <history>
        <date date-type="received"><day>20</day><month>April</month><year>2018</year></date>
           <date date-type="rev-request"><day>30</day><month>July</month><year>2018</year></date>
           <date date-type="rev-recd"><day>19</day><month>November</month><year>2018</year></date>
           <date date-type="accepted"><day>21</day><month>November</month><year>2018</year></date>
      </history>
      <permissions>
        
        
      <license license-type="open-access"><license-p>This work is licensed under the Creative Commons Attribution 4.0 International License. To view a copy of this licence, visit <ext-link ext-link-type="uri" xlink:href="https://creativecommons.org/licenses/by/4.0/">https://creativecommons.org/licenses/by/4.0/</ext-link></license-p></license></permissions><self-uri xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018.html">This article is available from https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018.html</self-uri><self-uri xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018.pdf">The full text article is available as a PDF file from https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018.pdf</self-uri>
      <abstract>
    <p id="d1e86">We have developed a spectral fitting method to retrieve upper atmospheric
parameters at multiple altitudes simultaneously during times of aurora,
allowing us to measure neutral temperatures and column densities of water
vapour. We use the method to separate airglow OH emissions from auroral
<inline-formula><mml:math id="M1" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M2" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in observations between 725 and 740 nm using the
High Throughput Imaging Echelle Spectrograph (HiTIES) located on Svalbard.
In this paper, we describe our new method and show the results of Monte Carlo
simulations using synthetic spectra which demonstrate the validity of the
spectral fitting method and provide an indication of uncertainties on
the retrieval of each atmospheric parameter. We show that the method allows
for the
retrieval of OH temperatures with an uncertainty of 6 % when
contamination by <inline-formula><mml:math id="M3" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission is small. <inline-formula><mml:math id="M4" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperatures can be
retrieved with uncertainties down to 3 %–5 % when <inline-formula><mml:math id="M5" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission
intensity is high. We can determine the intensity ratio between the
<inline-formula><mml:math id="M6" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets at 732 and 733 nm (which is a function of temperature)
with an uncertainty of 5 %.</p>
  </abstract>
    </article-meta>
  </front>
<body>
      

<sec id="Ch1.S1" sec-type="intro">
  <title>Introduction</title>
      <p id="d1e163">Spectral observations are an important diagnostic tool to probe the upper
atmosphere, a region that is difficult to measure directly. Emissions from
this region include optical airglow and aurorae, which are produced by the
de-excitation of atoms or molecules in the upper mesosphere and the
thermosphere. These emissions contain information on the state of the layers
of atmosphere in which they are produced and also on the solar photons or
precipitating energetic particles responsible for the excited states of the
atmospheric species. Furthermore, since optical emissions from the upper
atmosphere are produced over a wide range of altitudes, by simultaneously
observing at different wavelengths, it is possible to build up a picture of
the vertical structure of the upper atmosphere.</p>
      <p id="d1e166">The neutral temperature is one parameter that is possible to determine
from spectral observations in visible wavelengths. Making the assumption that
the emitting species are in local thermodynamic equilibrium (LTE), the
neutral temperature can be obtained by measuring emissions from the
rotational bands of molecules. In this way, neutral temperatures have been
determined from observations of airglow emissions from the OH layer located
near the mesopause
<xref ref-type="bibr" rid="bib1.bibx8 bib1.bibx22 bib1.bibx28 bib1.bibx9 bib1.bibx4" id="paren.1"><named-content content-type="pre">e.g.</named-content></xref>.
It has also been possible to measure rotational temperatures from N<inline-formula><mml:math id="M7" display="inline"><mml:mrow><mml:msubsup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>+</mml:mo></mml:msubsup></mml:mrow></mml:math></inline-formula>
ions observed during aurorae <xref ref-type="bibr" rid="bib1.bibx12 bib1.bibx10" id="paren.2"><named-content content-type="pre">e.g.</named-content></xref>.</p>
      <p id="d1e191">One difficulty with these measurements is that emissions from different
species often occur at the same wavelengths. For example, past studies of OH
temperatures (such as those listed above) have not been able to obtain
measurements during periods of auroral activity, when auroral emissions
contaminate the OH spectrum. To overcome this problem, we have developed a
method to distinguish different emissions seen in the High Throughput Imaging
Echelle Spectrograph, HiTIES <xref ref-type="bibr" rid="bib1.bibx5" id="paren.3"/>, by fitting the
spectrum, thus enabling us to measure temperatures at different altitudes
simultaneously.</p>
      <p id="d1e197">Our spectral fitting method also allows for the determination of the column density
of water vapour, or precipitable water vapour (PWV), by measuring the
absorption of upper atmospheric airglow emissions. There are multiple other
methods traditionally used to measure PWV, either from the<?pagebreak page318?> ground using the
Global Navigation Satellite System (GNSS) <xref ref-type="bibr" rid="bib1.bibx2 bib1.bibx30" id="paren.4"><named-content content-type="pre">e.g.</named-content></xref>,
from radiosondes <xref ref-type="bibr" rid="bib1.bibx15" id="paren.5"><named-content content-type="pre">e.g.</named-content></xref>, or from satellite
observations <xref ref-type="bibr" rid="bib1.bibx25 bib1.bibx3 bib1.bibx20" id="paren.6"><named-content content-type="pre">e.g.</named-content></xref>. However,
polar regions pose certain difficulties for these methods. Indeed, there is a
lack of stations for ground-based measurements, and satellite retrieval
methods using microwave imagers require knowledge of the surface emissivity,
which is large and highly variable over ice and snow <xref ref-type="bibr" rid="bib1.bibx18" id="paren.7"/>.
The optical ground-based measurement of PWV from airglow, described in this
paper, allows for estimates of atmospheric water vapour column densities at high
temporal resolution in the Arctic.</p>
      <p id="d1e219">The instrument is described in Sect. <xref ref-type="sec" rid="Ch1.S2"/>, and the different
emissions it measures are described in Sect. <xref ref-type="sec" rid="Ch1.S3"/>. Section <xref ref-type="sec" rid="Ch1.S4"/>
details the spectral fitting and temperature retrieval process. We have run a
Monte Carlo simulation to quantify the uncertainties on parameter retrieval
from the HiTIES spectra; the results of these retrieval tests are discussed
in Sect. <xref ref-type="sec" rid="Ch1.S5"/>. Monte Carlo simulations also allow us to
assess uncertainties on the laboratory measurements of quantum numbers
required to determine OH temperatures, as described in
Sect. <xref ref-type="sec" rid="Ch1.S6"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F1"><caption><p id="d1e234">Diagrams showing the different wavebands of some mosaic
interference filters used with HiTIES. The four-panel mosaic <bold>(a)</bold> has
been in use for most seasons between 2003 and 2015; the three-panel
mosaic <bold>(b)</bold> has been in use since December 2015.</p></caption>
        <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f01.png"/>

      </fig>

</sec>
<sec id="Ch1.S2">
  <title>HiTIES</title>
      <p id="d1e255">The High Throughput Imaging Echelle Spectrograph <xref ref-type="bibr" rid="bib1.bibx5" id="paren.8"/> has
been measuring emissions from the upper polar atmosphere since the year 2000.
It is a part of the Spectrographic Imaging Facility (SIF) located in the
high Arctic on Svalbard at the Kjell Henriksen Observatory (78.148<inline-formula><mml:math id="M8" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> N,
16.043<inline-formula><mml:math id="M9" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> E). The spectrograph has an 8<inline-formula><mml:math id="M10" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula> slit that is centred on
the magnetic zenith. Light entering the instrument passes through a
collimator, before being diffracted by an echelle grating and re-imaged on an
EMCCD detector. A mosaic of interference filters is used to separate
overlapping diffraction orders, allowing for the simultaneous observation at high
temporal and spectral resolution of non-contiguous spectral regions.
Figure <xref ref-type="fig" rid="Ch1.F1"/> shows a schematic diagram of the two mosaic filters
that have been used the most often over the lifetime of the instrument. Each
individual panel of the filters is centred in wavelength on a particular
atmospheric emission of interest, although it should be noted that each panel
may also contain emissions from multiple other species.</p>
      <p id="d1e290">The instrument records images at a frequency of 2 Hz; however, depending on
the brightness of the observed emissions, the spectra are typically
post-integrated to between <inline-formula><mml:math id="M11" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">10</mml:mn></mml:mrow></mml:math></inline-formula> and 120 s. The width of the
spectrograph slit can be changed to adjust the spectral resolution, with higher
resolution being a trade-off with the amount of light captured. In the
2015–2016 season, during which the data in Fig. <xref ref-type="fig" rid="Ch1.F2"/>
were
recorded, the FWHM was 0.15 nm.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F2" specific-use="star"><caption><p id="d1e307">Example HiTIES spectrum during aurora and fitted components <bold>(a)</bold>.
The data were taken on 15 December 2015 at 01:40 UT with an
integration period of 2 min. The observed spectrum is plotted in light
grey with crosses. The fit to the data using the fitting process described in
Sect. <xref ref-type="sec" rid="Ch1.S4"/> is shown in a thick black line. The coloured lines
represent the components of the fit: OH lines in green, <inline-formula><mml:math id="M12" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> in orange,
<inline-formula><mml:math id="M13" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission in purple, and the horizontal grey line is a constant
background. Panel <bold>(b)</bold> shows residuals of the fit.</p></caption>
        <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f02.png"/>

      </fig>

</sec>
<sec id="Ch1.S3">
  <title>Atmospheric emissions</title>
      <p id="d1e352">A number of different mosaic filters have been in use with the HiTIES
instrument over its years of operation, with filters containing panels
observing the wavelength region between 725 and 740 nm in use for most winter
seasons since 2003. The spectral fitting described in this paper is applied
to spectra in this panel, called the “<inline-formula><mml:math id="M14" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> panel”, since it contains two
doublets of auroral origin from the <inline-formula><mml:math id="M15" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> ion (see
Sect. <xref ref-type="sec" rid="Ch1.S3.SS2"/>). The <inline-formula><mml:math id="M16" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> panel is located in the top left
corner of the four-panel mosaic, as drawn in
Fig. <xref ref-type="fig" rid="Ch1.F1"/>a, and in the middle of the three-panel mosaic shown in Fig. <xref ref-type="fig" rid="Ch1.F1"/>b. Also
observed in this panel are OH
airglow emissions from the (8-3) Meinel band (see Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>)
and <inline-formula><mml:math id="M17" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> 1P emissions from the (6-4) and (5-3) bands (see
Sect. <xref ref-type="sec" rid="Ch1.S3.SS3"/>).</p>
      <p id="d1e410">An example of a spectrum recorded with the HiTIES <inline-formula><mml:math id="M18" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> panel is plotted in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>a. The observations are shown
in grey crosses and the thick black line represents a spectrum that has been
fitted to the data using the method described in Sect. <xref ref-type="sec" rid="Ch1.S4"/>. The
different components of the fit that summed together produce the think black
line are plotted in coloured lines: OH lines in green, <inline-formula><mml:math id="M19" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> lines in orange,
and <inline-formula><mml:math id="M20" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> band emission in purple.</p>
      <p id="d1e450">There are several parameters of interest we aim to retrieve from each HiTIES
spectrum that can provide us with information on the state of the upper
atmosphere. These parameters are the following:
<list list-type="bullet"><list-item>
      <p id="d1e455">intensities of the OH and <inline-formula><mml:math id="M21" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> emission lines and of the <inline-formula><mml:math id="M22" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
emission;</p></list-item><list-item>
      <p id="d1e481"><inline-formula><mml:math id="M23" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> rotational temperature;</p></list-item><list-item>
      <p id="d1e495">OH rotational temperature;</p></list-item><list-item>
      <p id="d1e499">ratio of <inline-formula><mml:math id="M24" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets, which in future will allow for the determination of F-region neutral
temperature; and</p></list-item><list-item>
      <p id="d1e514">precipitable water vapour.</p></list-item></list></p>
      <p id="d1e517">The following, Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/> to <xref ref-type="sec" rid="Ch1.S3.SS3"/>,
describes the emission components measured by HiTIES in more detail.</p>
<?pagebreak page319?><sec id="Ch1.S3.SS1">
  <title>OH airglow</title>
      <p id="d1e530">Molecular vibration–rotation transitions in the layer of excited hydroxyl
molecules located near the mesopause give rise to airglow emission
<xref ref-type="bibr" rid="bib1.bibx16 bib1.bibx17" id="paren.9"/> that spans from about 500 to 4000 nm
<xref ref-type="bibr" rid="bib1.bibx27" id="paren.10"/>. Rocket measurements have shown that the OH layer is
centred at approximately 87 km and has a thickness of 8 km <xref ref-type="bibr" rid="bib1.bibx1" id="paren.11"/>.
OH airglow emission lines are used to measure the rotational temperature of
the molecules at the altitude of emission
<xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx22 bib1.bibx9" id="paren.12"><named-content content-type="pre">e.g.</named-content></xref>. Using the HiTIES
instrument, we observe OH lines from the (8-3) vibrational band in the <inline-formula><mml:math id="M25" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
panel <xref ref-type="bibr" rid="bib1.bibx4" id="paren.13"/> and from the (5-4) and (9-1) bands in the OH
panel.</p>
      <p id="d1e562">Hydroxyl rotational temperatures are derived by fitting a straight line to a
Boltzmann plot in which <inline-formula><mml:math id="M26" display="inline"><mml:mrow><mml:mi mathvariant="normal">ln</mml:mi><mml:mfenced open="{" close="}"><mml:mrow><mml:mi>I</mml:mi><mml:mo>/</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:mi>A</mml:mi><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn><mml:mi>J</mml:mi><mml:mo>+</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:mfenced></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> is
plotted as a function of <inline-formula><mml:math id="M27" display="inline"><mml:mrow><mml:mo>(</mml:mo><mml:mi>h</mml:mi><mml:mi>c</mml:mi><mml:mo>/</mml:mo><mml:mi>k</mml:mi><mml:mo>)</mml:mo><mml:mi>F</mml:mi></mml:mrow></mml:math></inline-formula>, where <inline-formula><mml:math id="M28" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> is the OH line intensity, <inline-formula><mml:math id="M29" display="inline"><mml:mi>A</mml:mi></mml:math></inline-formula>
is the transition probability, <inline-formula><mml:math id="M30" display="inline"><mml:mi>J</mml:mi></mml:math></inline-formula> is the upper state total angular
momentum quantum number, <inline-formula><mml:math id="M31" display="inline"><mml:mi>F</mml:mi></mml:math></inline-formula> is the energy level of the initial rotational
level, <inline-formula><mml:math id="M32" display="inline"><mml:mi>h</mml:mi></mml:math></inline-formula> is Planck's constant, <inline-formula><mml:math id="M33" display="inline"><mml:mi>c</mml:mi></mml:math></inline-formula> is the speed of light, and <inline-formula><mml:math id="M34" display="inline"><mml:mi>k</mml:mi></mml:math></inline-formula> is
Boltzmann's constant. If we assume a Boltzmann distribution for the
rotational level population, the function is linear and the inverse of the
slope of the fitted straight line is the neutral temperature. An example of a
Boltzmann plot can be found in Fig. <xref ref-type="fig" rid="Ch1.F3"/>. In determining the
temperature, we make use of the strongest P-branch OH(8–3) lines recorded by
HiTIES, the four P<inline-formula><mml:math id="M35" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> lines: P<inline-formula><mml:math id="M36" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(2), P<inline-formula><mml:math id="M37" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3), P<inline-formula><mml:math id="M38" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(4), and P<inline-formula><mml:math id="M39" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(5).
These are shown in blue circles in Fig. <xref ref-type="fig" rid="Ch1.F3"/>; see also these
lines labelled in the spectrum in Fig. <xref ref-type="fig" rid="Ch1.F2"/>. As LTE is
not always assured, especially in the higher vibrational states of OH
<xref ref-type="bibr" rid="bib1.bibx21" id="paren.14"/>, we place constraints on the variance between the
linear fit and the P<inline-formula><mml:math id="M40" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> and P<inline-formula><mml:math id="M41" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> lines (the latter are the red circles in
Fig. <xref ref-type="fig" rid="Ch1.F3"/>). A given temperature retrieval is rejected if the
linear fit to P<inline-formula><mml:math id="M42" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> line variance is greater than 0.05 or if the linear fit
to P<inline-formula><mml:math id="M43" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula> line variance is over 0.3. For more information on this process, see
<xref ref-type="bibr" rid="bib1.bibx4" id="text.15"/>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F3"><caption><p id="d1e765">Boltzmann plot determined from the OH(8-3) P-branch lines shown in
the HiTIES spectrum from Fig. <xref ref-type="fig" rid="Ch1.F2"/>, taken on the 15 December 2015
at 01:40 UT with an integration time of 2 min. The solid
black line is a linear fit to the P<inline-formula><mml:math id="M44" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> lines (shown as blue circles); the
inverse of the slope gives a rotational temperature of 193.9 K. Errors on the
OH intensities <inline-formula><mml:math id="M45" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> are obtained from the residuals of the spectral fit.</p></caption>
          <?xmltex \igopts{width=199.169291pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f03.png"/>

        </fig>

      <p id="d1e792">Water vapour in the troposphere is responsible for absorbing each of the OH
lines to a different degree; of the OH lines measured in the HiTIES <inline-formula><mml:math id="M46" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
panel, the OH(8-3) P<inline-formula><mml:math id="M47" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(4) line at 736.9 nm is particularly affected by
<inline-formula><mml:math id="M48" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> absorption, which must thus be taken into account to accurately
determine the OH rotational temperature. Therefore, we model water vapour
absorption using the HIgh-resolution TRANsmission molecular absorption
database, HITRAN <xref ref-type="bibr" rid="bib1.bibx23" id="paren.16"/>, in order to remove its effect from the
measured OH line intensities. This process, which is described further in
Sect. <xref ref-type="sec" rid="Ch1.S4"/> and <xref ref-type="bibr" rid="bib1.bibx4" id="text.17"/>, also provides us with an
estimate of the column density of water vapour in the atmosphere: the
precipitable water vapour (PWV).</p>
</sec>
<sec id="Ch1.S3.SS2">
  <?xmltex \opttitle{{$\chem{O^{{+}}}$} aurora}?><title><inline-formula><mml:math id="M49" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> aurora</title>
      <?pagebreak page320?><p id="d1e854">The <inline-formula><mml:math id="M50" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> panel is so named because it contains two spectrally
unresolved emission line doublets from the <inline-formula><mml:math id="M51" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> ion at 731.904 and
732.012 and at 732.968 and 733.076 nm <xref ref-type="bibr" rid="bib1.bibx26" id="paren.18"/> resulting
from the transitions <inline-formula><mml:math id="M52" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M53" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi>D</mml:mi><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>
and <inline-formula><mml:math id="M54" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi>P</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M55" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi>D</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula>, respectively.
These emission doublets are shown in orange in the spectrum of
Fig. <xref ref-type="fig" rid="Ch1.F2"/>. Electron impact ionisation from low-energy
precipitating electrons produces the excited <inline-formula><mml:math id="M56" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> states that are
responsible for the auroral <inline-formula><mml:math id="M57" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> emission measured by HiTIES.
Furthermore, the ratio of the two <inline-formula><mml:math id="M58" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets
<inline-formula><mml:math id="M59" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>I</mml:mi><mml:mrow><mml:mn mathvariant="normal">731.904</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>I</mml:mi><mml:mrow><mml:mn mathvariant="normal">732.012</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo><mml:mo>/</mml:mo><mml:mo>(</mml:mo><mml:msub><mml:mi>I</mml:mi><mml:mrow><mml:mn mathvariant="normal">732.968</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:msub><mml:mo>+</mml:mo><mml:msub><mml:mi>I</mml:mi><mml:mrow><mml:mn mathvariant="normal">733.076</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow></mml:msub><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>
is of particular interest. Indeed, <xref ref-type="bibr" rid="bib1.bibx29" id="text.19"/> showed that the value
of <inline-formula><mml:math id="M60" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> depends on the neutral temperature, thus allowing for a
measurement of <inline-formula><mml:math id="M61" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> at the high altitudes at which the <inline-formula><mml:math id="M62" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> emission
is produced (<inline-formula><mml:math id="M63" display="inline"><mml:mrow><mml:mo>∼</mml:mo><mml:mn mathvariant="normal">250</mml:mn></mml:mrow></mml:math></inline-formula> km). Further validation is needed to convert
<inline-formula><mml:math id="M64" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> to <inline-formula><mml:math id="M65" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">n</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, so in the remainder of this paper, we will only
consider the ratio <inline-formula><mml:math id="M66" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
</sec>
<sec id="Ch1.S3.SS3">
  <?xmltex \opttitle{{$\chem{N_{2}}$} aurora}?><title><inline-formula><mml:math id="M67" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> aurora</title>
      <p id="d1e1216"><inline-formula><mml:math id="M68" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> first positive (1P) emission is measured in the HiTIES <inline-formula><mml:math id="M69" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> panel.
With the four-panel mosaic (depicted in Fig. <xref ref-type="fig" rid="Ch1.F1"/>a), it
is mostly the (5-3) band that is observed since the band head wavelength is
738.72 nm and <inline-formula><mml:math id="M70" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> 1P bands are degraded to the violet. With the newer
three-panel mosaic (Fig. <xref ref-type="fig" rid="Ch1.F1"/>b), the extended
wavelength range of the <inline-formula><mml:math id="M71" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> panel means that portions of the (4-2) and
(6-4) bands, with band head wavelengths of 750.47 and 727.40 nm,
respectively, are also observed. The <inline-formula><mml:math id="M72" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> 1P component of the fit to the
HiTIES spectrum in Fig. <xref ref-type="fig" rid="Ch1.F2"/> is shown in purple.</p>
      <p id="d1e1280">Following the methods of <xref ref-type="bibr" rid="bib1.bibx10 bib1.bibx11" id="text.20"/>, synthetic <inline-formula><mml:math id="M73" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> 1P
line spectra are produced for vibrational levels 0 to 12 at different
rotational temperatures. These spectra are convolved with a Gaussian
instrument function of full width at half maximum (FWHM) equal to 0.12 nm to
produce the synthetic <inline-formula><mml:math id="M74" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> 1P spectra plotted in Fig. <xref ref-type="fig" rid="Ch1.F4"/>.
The clear change in spectral shape with rotational temperature allows us to
retrieve a value for the <inline-formula><mml:math id="M75" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> rotational temperature by choosing the best
fit synthetic spectrum to a given HiTIES measurement (see
Sect. <xref ref-type="sec" rid="Ch1.S4"/>). Future analysis of the dataset of <inline-formula><mml:math id="M76" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
temperatures will consider the conditions under which the layer can be
considered in LTE.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F4" specific-use="star"><caption><p id="d1e1337">Synthetic <inline-formula><mml:math id="M77" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> spectra at different rotational temperatures.
The rotational band and, where present, band heads are labelled above the
spectra.</p></caption>
          <?xmltex \igopts{width=341.433071pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f04.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S4">
  <title>Fitting process</title>
      <p id="d1e1364">A least-squares fitting routine is used to determine the parameters of the
superposed emissions present in the measured HiTIES spectra. The OH and <inline-formula><mml:math id="M78" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
lines are represented as Gaussians, all with the same FWHM, since the width
is principally determined by the instrument function. Line centre wavelengths
are fixed at the values given in Table <xref ref-type="table" rid="Ch1.T1"/>. OH
rotational states are split due to nuclear-spin–electron-orbit interactions,
referred to as <inline-formula><mml:math id="M79" display="inline"><mml:mi mathvariant="normal">Λ</mml:mi></mml:math></inline-formula> doubling. The resulting <inline-formula><mml:math id="M80" display="inline"><mml:mi mathvariant="normal">Λ</mml:mi></mml:math></inline-formula>-doubled components
are not spectrally resolved by HiTIES, meaning that the hydroxyl emission
lines in Fig. <xref ref-type="fig" rid="Ch1.F2"/> are made up of two components,
labelled with the subscripts <inline-formula><mml:math id="M81" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M82" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> (referring to the parity of the
lower state) in Table <xref ref-type="table" rid="Ch1.T1"/>. We fit a Gaussian for each
<inline-formula><mml:math id="M83" display="inline"><mml:mi mathvariant="normal">Λ</mml:mi></mml:math></inline-formula>-doubled component and make the assumption that the two components
of each OH vibrational–rotational transition are of equal intensity; thus we
fix the peak height of the Gaussian representing the <inline-formula><mml:math id="M84" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> component of each
transition to have the same peak height as the <inline-formula><mml:math id="M85" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> component.</p>
      <p id="d1e1434">The two <inline-formula><mml:math id="M86" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets are represented in the fit by four Gaussians centred
at the wavelengths given in Table <xref ref-type="table" rid="Ch1.T1"/>. From the Einstein
coefficients of these transitions <xref ref-type="bibr" rid="bib1.bibx31" id="paren.21"/>, we obtain the
following constraints on the intensities of the <inline-formula><mml:math id="M87" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> lines:

              <disp-formula specific-use="align" content-type="numbered"><mml:math id="M88" display="block"><mml:mtable displaystyle="true"><mml:mlabeledtr id="Ch1.E1"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>I</mml:mi><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.668</mml:mn><mml:mo>×</mml:mo><mml:mi>I</mml:mi><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr><mml:mlabeledtr id="Ch1.E2"><mml:mtd/><mml:mtd><mml:mrow><mml:mstyle class="stylechange" displaystyle="true"/><mml:mi>I</mml:mi><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>)</mml:mo><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0.540</mml:mn><mml:mo>×</mml:mo><mml:mi>I</mml:mi><mml:msup><mml:mo>(</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mo>/</mml:mo><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>)</mml:mo><mml:mo>,</mml:mo></mml:mrow></mml:mtd></mml:mlabeledtr></mml:mtable></mml:math></disp-formula>

          where <inline-formula><mml:math id="M89" display="inline"><mml:mi>I</mml:mi></mml:math></inline-formula> is the line intensity. Equations (<xref ref-type="disp-formula" rid="Ch1.E1"/>) and
(<xref ref-type="disp-formula" rid="Ch1.E2"/>) are included as constraints in the fitting process,
allowing for 10 % variation in the coefficients.</p>
      <p id="d1e1682">We create a database of <inline-formula><mml:math id="M90" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> model spectra at temperatures from 150 to
1150 K, with a resolution of 10 K and an instrument function FWHM
appropriately chosen for the focus of the HiTIES instrument during a given
season. The fitting routine finds the best match to the data out of this grid
of modelled spectra, providing a direct retrieval of the <inline-formula><mml:math id="M91" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> rotational
temperature.</p>
      <?pagebreak page321?><p id="d1e1707">Each measured HiTIES spectrum is fitted with 30 parameters: 24 OH line peak
intensities (modelled as 48 Gaussians with <inline-formula><mml:math id="M92" display="inline"><mml:mi>e</mml:mi></mml:math></inline-formula> and <inline-formula><mml:math id="M93" display="inline"><mml:mi>f</mml:mi></mml:math></inline-formula> components constrained to
have the same height for the same rotational–vibrational transition), two <inline-formula><mml:math id="M94" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>
line intensities (modelled as four Gaussians, with constrained ratios between
the upper and lower wavelength components of each doublet given in
Eqs. <xref ref-type="disp-formula" rid="Ch1.E1"/> and <xref ref-type="disp-formula" rid="Ch1.E2"/>), the FWHM (assumed the
same for all the OH and <inline-formula><mml:math id="M95" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> Gaussians), the intensity and rotational
temperature of the <inline-formula><mml:math id="M96" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission, and a constant background intensity.
Figure <xref ref-type="fig" rid="Ch1.F2"/>a shows the resulting fit to a
spectrum recorded by HiTIES on 15 December 2015 at 01:40 UT; the data
are shown in light grey and the fitted spectrum is a thick black line.
Figure <xref ref-type="fig" rid="Ch1.F2"/>b shows the residuals of this
fit, for which it can be seen that a good fit to the data is achieved with the
chosen parameters. However, at the short wavelength end of the spectrum,
there are a few emission features in the data that are not present in the
fitted spectrum, in particular peaks near 727.3, 728.0, and 728.9 nm. We
believe these peaks correspond to <inline-formula><mml:math id="M97" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">O</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission, which is not included in our
fit. Therefore, our fitted values of the Q-branch OH(8-3) lines, present at
the short wavelength end of the HiTIES spectrum, are likely unreliable, so
these OH lines are not used for the temperature retrieval.</p>
      <p id="d1e1778">With the fitted intensities of the P-branch OH lines, we determine the OH
rotational temperature by constructing a Boltzmann plot (see
Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/> and Fig. <xref ref-type="fig" rid="Ch1.F3"/>). The temperature
retrieval is performed using the strongest P<inline-formula><mml:math id="M98" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula> branch lines: P<inline-formula><mml:math id="M99" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(2),
P<inline-formula><mml:math id="M100" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3), P<inline-formula><mml:math id="M101" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(4), and P<inline-formula><mml:math id="M102" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(5).</p>
      <p id="d1e1831">Tropospheric water vapour absorption attenuates many of the emission lines
measured with HiTIES. This effect must be taken into account for correct
parameter retrieval from the fitting process. Modelling of the <inline-formula><mml:math id="M103" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula>
absorption in each line is not just done for OH emission, as described in
Sect. <xref ref-type="sec" rid="Ch1.S3.SS1"/>, but also for each <inline-formula><mml:math id="M104" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M105" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission line.
The HITRAN <xref ref-type="bibr" rid="bib1.bibx23" id="paren.22"/> spectral database is used to determine the
<inline-formula><mml:math id="M106" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> absorption cross section, and water vapour absorption in the column of
atmosphere above the instrument is calculated using the Beer–Lambert law
<xref ref-type="bibr" rid="bib1.bibx4" id="paren.23"><named-content content-type="pre">see</named-content></xref>. We parameterise water vapour absorption with the
coefficient <inline-formula><mml:math id="M107" display="inline"><mml:mi mathvariant="italic">ς</mml:mi></mml:math></inline-formula> given for the OH and <inline-formula><mml:math id="M108" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> lines in
Table <xref ref-type="table" rid="Ch1.T1"/>, which is related to absorption
(<inline-formula><mml:math id="M109" display="inline"><mml:mrow><mml:msub><mml:mi>a</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) and transmission (<inline-formula><mml:math id="M110" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) coefficients by the
following:
          <disp-formula id="Ch1.E3" content-type="numbered"><mml:math id="M111" display="block"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>-</mml:mo><mml:msub><mml:mi>a</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">exp</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ς</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PWV</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where PWV is the precipitable water vapour in millimetres. PWV represents the height
of a column of liquid water that would result from the condensation of all
the water in a column of atmosphere. Thus, a PWV of 1 mm is equivalent to a
column density of <inline-formula><mml:math id="M112" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> of 1 kg m<inline-formula><mml:math id="M113" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>.</p>

<?xmltex \floatpos{t}?><table-wrap id="Ch1.T1"><caption><p id="d1e2002">Emission lines used in the spectral fit. The line centre wavelengths
(<inline-formula><mml:math id="M114" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) are from <xref ref-type="bibr" rid="bib1.bibx24" id="text.24"/>, converted to air wavelengths
following <xref ref-type="bibr" rid="bib1.bibx6" id="text.25"/>. Water vapour transmission is given by a
function of PWV: <inline-formula><mml:math id="M115" display="inline"><mml:mrow><mml:msub><mml:mi>t</mml:mi><mml:mi mathvariant="italic">λ</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:mi mathvariant="normal">exp</mml:mi><mml:mo>(</mml:mo><mml:mo>-</mml:mo><mml:mi mathvariant="italic">ς</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PWV</mml:mi><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula>,
with PWV in millimetres.</p></caption><oasis:table frame="topbot"><oasis:tgroup cols="3">
     <oasis:colspec colnum="1" colname="col1" align="left"/>
     <oasis:colspec colnum="2" colname="col2" align="center"/>
     <oasis:colspec colnum="3" colname="col3" align="center"/>
     <oasis:thead>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">Transition</oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
       </oasis:row>
     </oasis:thead>
     <oasis:tbody>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">OH(8-3)</oasis:entry>
         <oasis:entry colname="col2"><inline-formula><mml:math id="M116" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">λ</mml:mi><mml:mi mathvariant="normal">c</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (nm)</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M117" display="inline"><mml:mi mathvariant="italic">ς</mml:mi></mml:math></inline-formula> (mm<inline-formula><mml:math id="M118" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>)</oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M119" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(1)<inline-formula><mml:math id="M120" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">727.5095</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M121" display="inline"><mml:mrow><mml:mn mathvariant="normal">4.36</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M122" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(1)<inline-formula><mml:math id="M123" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">727.5120</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M124" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.04</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M125" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(1)<inline-formula><mml:math id="M126" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">727.6400</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M127" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.57</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M128" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(1)<inline-formula><mml:math id="M129" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">727.6410</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M130" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.44</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M131" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(2)<inline-formula><mml:math id="M132" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">728.4421</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M133" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.18</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M134" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(2)<inline-formula><mml:math id="M135" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">728.4457</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M136" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.92</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M137" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3)<inline-formula><mml:math id="M138" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">729.5901</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M139" display="inline"><mml:mrow><mml:mn mathvariant="normal">9.31</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">Q<inline-formula><mml:math id="M140" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3)<inline-formula><mml:math id="M141" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">729.5978</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M142" display="inline"><mml:mrow><mml:mn mathvariant="normal">7.15</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M143" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(2)<inline-formula><mml:math id="M144" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">730.3679</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M145" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.92</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M146" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(2)<inline-formula><mml:math id="M147" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">730.3754</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M148" display="inline"><mml:mrow><mml:mn mathvariant="normal">5.69</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M149" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(2)<inline-formula><mml:math id="M150" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">731.6246</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M151" display="inline"><mml:mrow><mml:mn mathvariant="normal">7.24</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M152" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(2)<inline-formula><mml:math id="M153" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">731.6318</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M154" display="inline"><mml:mrow><mml:mn mathvariant="normal">7.22</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M155" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(3)<inline-formula><mml:math id="M156" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">732.9123</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M157" display="inline"><mml:mrow><mml:mn mathvariant="normal">7.51</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M158" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(3)<inline-formula><mml:math id="M159" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">732.9173</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M160" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.89</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M161" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3)<inline-formula><mml:math id="M162" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">734.0813</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M163" display="inline"><mml:mrow><mml:mn mathvariant="normal">8.42</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M164" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3)<inline-formula><mml:math id="M165" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">734.0956</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M166" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.23</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M167" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(4)<inline-formula><mml:math id="M168" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">735.8657</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M169" display="inline"><mml:mrow><mml:mn mathvariant="normal">7.74</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M170" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(4)<inline-formula><mml:math id="M171" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">735.8661</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M172" display="inline"><mml:mrow><mml:mn mathvariant="normal">8.01</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M173" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(4)<inline-formula><mml:math id="M174" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">736.9248</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M175" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.55</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M176" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(4)<inline-formula><mml:math id="M177" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">736.9483</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M178" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.62</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M179" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(5)<inline-formula><mml:math id="M180" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">739.2169</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M181" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.60</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M182" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:math></inline-formula>(5)<inline-formula><mml:math id="M183" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">739.2228</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M184" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.69</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M185" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(5)<inline-formula><mml:math id="M186" display="inline"><mml:msub><mml:mi/><mml:mi>e</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">740.1688</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M187" display="inline"><mml:mrow><mml:mn mathvariant="normal">6.09</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1">P<inline-formula><mml:math id="M188" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(5)<inline-formula><mml:math id="M189" display="inline"><mml:msub><mml:mi/><mml:mi>f</mml:mi></mml:msub></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">740.2028</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M190" display="inline"><mml:mrow><mml:mn mathvariant="normal">6.98</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row rowsep="1">
         <oasis:entry colname="col1"><inline-formula><mml:math id="M191" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2"/>
         <oasis:entry colname="col3"/>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M192" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M193" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">731.9044</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M194" display="inline"><mml:mrow><mml:mn mathvariant="normal">1.69</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M195" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M196" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">5</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">732.0121</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M197" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.39</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M198" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">1</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M199" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">732.9675</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M200" display="inline"><mml:mrow><mml:mn mathvariant="normal">2.52</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">4</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
       <oasis:row>
         <oasis:entry colname="col1"><inline-formula><mml:math id="M201" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">P</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup><mml:mo>→</mml:mo></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M202" display="inline"><mml:mrow><mml:msup><mml:mi/><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:msubsup><mml:mi mathvariant="normal">D</mml:mi><mml:mrow><mml:mn mathvariant="normal">3</mml:mn><mml:mo>/</mml:mo><mml:mn mathvariant="normal">2</mml:mn></mml:mrow><mml:mn mathvariant="normal">0</mml:mn></mml:msubsup></mml:mrow></mml:math></inline-formula></oasis:entry>
         <oasis:entry colname="col2">733.0755</oasis:entry>
         <oasis:entry colname="col3"><inline-formula><mml:math id="M203" display="inline"><mml:mrow><mml:mn mathvariant="normal">8.57</mml:mn><mml:mo>×</mml:mo><mml:msup><mml:mn mathvariant="normal">10</mml:mn><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">3</mml:mn></mml:mrow></mml:msup></mml:mrow></mml:math></inline-formula></oasis:entry>
       </oasis:row>
     </oasis:tbody>
   </oasis:tgroup></oasis:table></table-wrap>

      <p id="d1e3508">The spectral fitting and OH temperature retrieval process is run multiple
times, each assuming a different given value of PWV. From the Boltzmann plot
constructed with OH P-branch lines, the correlation coefficient <inline-formula><mml:math id="M204" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> of the
linear fit allowing
for temperature retrieval is determined for each of these
runs. The retrieved value of PWV for a given HiTIES spectrum is then taken as
the PWV that maximises the Boltzmann plot correlation coefficient <inline-formula><mml:math id="M205" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>. An
example of this process is shown in Fig. <xref ref-type="fig" rid="Ch1.F5"/> for the spectrum
from Fig. <xref ref-type="fig" rid="Ch1.F2"/>, taken on 15 December 2015 at 01:40 UT.
Each blue point in Fig. <xref ref-type="fig" rid="Ch1.F5"/> is a value of <inline-formula><mml:math id="M206" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> from a
Boltzmann plot constructed using the OH P-branch line intensities calculated
by the spectral fitting routine, assuming a given value of the PWV between 0
and 10 mm. The value of PWV which maximises <inline-formula><mml:math id="M207" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is found by fitting the
blue points in Fig <xref ref-type="fig" rid="Ch1.F5"/>. Since water vapour absorption is
calculated using the Beer–Lambert law, which takes the form of an
exponential, we find that the expression that provides the best fit to the
<inline-formula><mml:math id="M208" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> points is a sum of exponentials,
          <disp-formula id="Ch1.E4" content-type="numbered"><mml:math id="M209" display="block"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup><mml:mo>=</mml:mo><mml:mi>a</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">exp</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>b</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PWV</mml:mi></mml:mrow></mml:mfenced><mml:mo>+</mml:mo><mml:mi>c</mml:mi><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">exp</mml:mi><mml:mfenced close=")" open="("><mml:mrow><mml:mi>d</mml:mi><mml:mo>×</mml:mo><mml:mi mathvariant="normal">PWV</mml:mi></mml:mrow></mml:mfenced><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        and thus the maximum of <inline-formula><mml:math id="M210" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> is attained at a precipitable water vapour of
          <disp-formula id="Ch1.E5" content-type="numbered"><mml:math id="M211" display="block"><mml:mrow><mml:mi mathvariant="normal">PWV</mml:mi><mml:mo>=</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mn mathvariant="normal">1</mml:mn><mml:mrow><mml:mi>b</mml:mi><mml:mo>-</mml:mo><mml:mi>d</mml:mi></mml:mrow></mml:mfrac></mml:mstyle><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mspace linebreak="nobreak" width="0.125em"/><mml:mi mathvariant="normal">ln</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:mo>-</mml:mo><mml:mstyle displaystyle="true"><mml:mfrac style="display"><mml:mrow><mml:mi>c</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>d</mml:mi></mml:mrow><mml:mrow><mml:mi>a</mml:mi><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi>b</mml:mi></mml:mrow></mml:mfrac></mml:mstyle></mml:mrow></mml:mfenced><mml:mo>.</mml:mo></mml:mrow></mml:math></disp-formula>
        To reduce computational time, we have found that it is sufficient to run the
retrieval process at just five different values of PWV in order to determine
the maximum of <inline-formula><mml:math id="M212" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula>.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F5"><caption><p id="d1e3691">Correlation coefficient <inline-formula><mml:math id="M213" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> to a straight line in the Boltzmann
plot as a function of PWV used to correct the OH line intensities from the
HiTIES spectrum recorded on 15 December 2015 at 01:40 UT (from
Fig. <xref ref-type="fig" rid="Ch1.F2"/>). The blue points are values of <inline-formula><mml:math id="M214" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> produced
by the fitting process for each assumed value of PWV. The red curve is a fit
to these points and is used to determine the PWV at which <inline-formula><mml:math id="M215" display="inline"><mml:mrow><mml:msup><mml:mi>R</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msup></mml:mrow></mml:math></inline-formula> peaks.</p></caption>
        <?xmltex \igopts{width=170.716535pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f05.png"/>

      </fig>

      <p id="d1e3736">Considering that the main source of noise in a given spectrum is shot noise,
we determine the uncertainties on the fitted line intensities (<inline-formula><mml:math id="M216" display="inline"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">I</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>) using
the following:
          <disp-formula id="Ch1.E6" content-type="numbered"><mml:math id="M217" display="block"><mml:mrow><mml:msub><mml:mi>e</mml:mi><mml:mi mathvariant="normal">I</mml:mi></mml:msub><mml:mo>=</mml:mo><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">residuals</mml:mi></mml:msub><mml:mo>×</mml:mo><mml:msqrt><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">pixels</mml:mi></mml:msub></mml:mrow></mml:msqrt><mml:mo>,</mml:mo></mml:mrow></mml:math></disp-formula>
        where <inline-formula><mml:math id="M218" display="inline"><mml:mrow><mml:msub><mml:mi mathvariant="italic">σ</mml:mi><mml:mi mathvariant="normal">residuals</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the standard deviation of the residuals
and <inline-formula><mml:math id="M219" display="inline"><mml:mrow><mml:msub><mml:mi>N</mml:mi><mml:mi mathvariant="normal">pixels</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the number of pixels on the detector contained<?pagebreak page322?> in
the FWHM of the emission line. In this way, we can obtain uncertainty
estimates on the parameters retrieved from each particular spectrum. However,
we would also like to determine the ranges of parameters over which the
fitting process produces accurate results. For this reason, we carry out a
Monte Carlo simulation in Sect. <xref ref-type="sec" rid="Ch1.S5"/>.</p><?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S5">
  <title>Parameter retrieval tests</title>
      <p id="d1e3811">In order to estimate expected errors on the fitting and parameter retrieval
process described in Sect. <xref ref-type="sec" rid="Ch1.S4"/>, we have performed a Monte Carlo
simulation. Such a simulation also provides information on the region of
parameter space over which the fitting method is valid. Synthetic spectra
were generated containing OH, <inline-formula><mml:math id="M220" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M221" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> components in different
proportions and with different properties. The parameters of each synthetic
spectrum were drawn randomly within the following ranges.
<list list-type="bullet"><list-item>
      <p id="d1e3840"><inline-formula><mml:math id="M222" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>≡</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">OHP</mml:mi><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>)</mml:mo></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1300</mml:mn></mml:mrow></mml:math></inline-formula> R nm<inline-formula><mml:math id="M223" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></p></list-item><list-item>
      <p id="d1e3890"><inline-formula><mml:math id="M224" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>∈</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">170</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">240</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> K</p></list-item><list-item>
      <p id="d1e3916"><inline-formula><mml:math id="M225" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>≡</mml:mo><mml:mi mathvariant="normal">max</mml:mi><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mfenced close=")" open="("><mml:mi mathvariant="italic">λ</mml:mi></mml:mfenced></mml:mrow></mml:mfenced><mml:mo>∈</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3900</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> R nm<inline-formula><mml:math id="M226" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></p></list-item><list-item>
      <p id="d1e3977"><inline-formula><mml:math id="M227" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>∈</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">180</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1000</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> K</p></list-item><list-item>
      <p id="d1e4007"><inline-formula><mml:math id="M228" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>≡</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup><mml:mn mathvariant="normal">732</mml:mn><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>∈</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">3900</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> R nm<inline-formula><mml:math id="M229" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></p></list-item><list-item>
      <p id="d1e4065"><inline-formula><mml:math id="M230" display="inline"><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>∈</mml:mo><mml:mfenced open="[" close="]"><mml:mrow><mml:mn mathvariant="normal">1.25</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">1.4</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula></p></list-item><list-item>
      <p id="d1e4094"><inline-formula><mml:math id="M231" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">300</mml:mn></mml:mrow></mml:math></inline-formula> R nm<inline-formula><mml:math id="M232" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula></p></list-item><list-item>
      <p id="d1e4125"><inline-formula><mml:math id="M233" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">PWV</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msup><mml:mo>∈</mml:mo><mml:mfenced close="]" open="["><mml:mrow><mml:mn mathvariant="normal">0</mml:mn><mml:mo>,</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula> mm</p></list-item></list>
Note that <inline-formula><mml:math id="M234" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> represents the intensity of the strongest OH line
measured by HiTIES, the OH(8-3) P<inline-formula><mml:math id="M235" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3) line; <inline-formula><mml:math id="M236" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is the
intensity of the <inline-formula><mml:math id="M237" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublet at 732 nm, the intensity of the
<inline-formula><mml:math id="M238" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission, <inline-formula><mml:math id="M239" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, is the maximum intensity of this
emission over the 728 to 740 nm range, and <inline-formula><mml:math id="M240" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> is the level
of the background emission. We use the superscript “in” to mean parameters
that are used to construct the synthetic spectra (inputs to the MC
simulation or theoretical values) and the superscript “ret” for the value
of parameters retrieved from the spectral fitting process. The values of
<inline-formula><mml:math id="M241" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M242" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> are
fixed to values consistent with those from the HiTIES spectrum plotted in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>.</p>
      <p id="d1e4262">In constructing the synthetic spectra, we add random noise to the intensity
values in each wavelength bin. This random noise follows a Gaussian
distribution with standard deviation <inline-formula><mml:math id="M243" display="inline"><mml:msqrt><mml:mi>I</mml:mi></mml:msqrt></mml:math></inline-formula> in each bin to simulate shot
noise. Since HiTIES uses an electron multiplying charge-coupled device
(EMCCD), there is no read-out noise. For the simulations presented in
Sects. <xref ref-type="sec" rid="Ch1.S5.SS1"/>–<xref ref-type="sec" rid="Ch1.S5.SS5"/> and <xref ref-type="sec" rid="Ch1.S6"/>, we
neglect thermal noise as the detector is cooled to <inline-formula><mml:math id="M244" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M245" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C (see
Sect. <xref ref-type="sec" rid="Ch1.S5.SS6"/> for a brief discussion of the validity of this
assumption). In all, 50 000 synthetic spectra are produced and run through
the fitting and temperature retrieval process. This number is sufficient to
ensure convergence of the Monte Carlo simulation.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F6" specific-use="star"><caption><p id="d1e4303">2-D histograms of parameter retrieval tests using 50 000 synthetic
spectra. <bold>(a, b, c, d)</bold> The fractional error on the retrieval of
the OH temperature <inline-formula><mml:math id="M246" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>, <bold>(e, f, g, h)</bold> the error on the
<inline-formula><mml:math id="M247" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature, <inline-formula><mml:math id="M248" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, and <bold>(i, j, k, l)</bold> the error
on the <inline-formula><mml:math id="M249" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> ratio <inline-formula><mml:math id="M250" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. Panels <bold>(c, g, k)</bold> and <bold>(d, h, l)</bold> show the errors
as a function of the input <inline-formula><mml:math id="M251" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M252" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensities,
respectively. These intensities are normalised by either the OH intensity or
the intensity of the background <inline-formula><mml:math id="M253" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula>. Red circles indicate
mean values and red lines show 1 standard deviation on either side of the
mean using all of the generated synthetic spectra. <bold>(a, b, c)</bold> White
crosses and thick white lines are mean values and 1 standard deviation from
the mean, respectively, when the <inline-formula><mml:math id="M254" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensity parameter space is
restricted to the hatched area in panel <bold>(d)</bold>. Similarly, the white
crosses and lines in panels <bold>(e, f, g)</bold> represent the mean and
1 standard deviation from the mean, respectively, including only spectra with
<inline-formula><mml:math id="M255" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensities within the hatched area in panel <bold>(h)</bold>. The
white crosses and dotted lines in panels <bold>(i, j, l)</bold> are the mean and
1 standard deviation, respectively, including only spectra with
<inline-formula><mml:math id="M256" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> intensities in the hatched area in panel <bold>(k)</bold>.</p></caption>
        <?xmltex \igopts{width=426.791339pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f06.png"/>

      </fig>

      <p id="d1e4477">By comparing the input parameters to those retrieved, we assess how well the
spectral fitting method described in Sect. <xref ref-type="sec" rid="Ch1.S4"/> can extract the
different parameters of a HiTIES spectrum. The main results of this process
are plotted as two-dimensional histograms in the panels of
Fig. <xref ref-type="fig" rid="Ch1.F6"/>. Each row of this plot shows the error on the retrieval
of a parameter of interest. The top row, made up of panels (a, b, c, d),
represents fractional errors on the retrieval of the OH temperature as a
function of the theoretical OH temperature of the synthetic spectrum,
<inline-formula><mml:math id="M257" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, the theoretical <inline-formula><mml:math id="M258" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature,
<inline-formula><mml:math id="M259" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, the intensity of <inline-formula><mml:math id="M260" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, and the
intensity of <inline-formula><mml:math id="M261" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>, respectively. The middle row
(Fig. <xref ref-type="fig" rid="Ch1.F6"/>e, f, g, h) contains plots showing the fractional error
on the retrieval of the <inline-formula><mml:math id="M262" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature, and plots in the bottom row,
panels (i, k, j, l), show the fractional error on the retrieval of the ratio
between the intensities of the <inline-formula><mml:math id="M263" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets, <inline-formula><mml:math id="M264" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. The
intensities of the different emissions vary enormously between spectra
recorded at different times. Therefore, the intensities of <inline-formula><mml:math id="M265" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> and
<inline-formula><mml:math id="M266" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> that we have plotted along the <inline-formula><mml:math id="M267" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axis of panels (c, g, k) and
(d, h, l), respectively, are normalised by the intensity of the OH(8-3)
P<inline-formula><mml:math id="M268" display="inline"><mml:mrow><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub><mml:mo>(</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>)</mml:mo></mml:mrow></mml:math></inline-formula> line, <inline-formula><mml:math id="M269" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, and the intensity of the
background, <inline-formula><mml:math id="M270" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, as
<inline-formula><mml:math id="M271" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M272" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> have
values that are fixed in all synthetic spectra.</p>
      <p id="d1e4687">The histograms that make up each panel of Fig. <xref ref-type="fig" rid="Ch1.F6"/> are
constructed with the 50 000 synthetic spectra that have been processed using
the spectral fitting routine. The red circle markers show the mean values and
the red lines represent 1 standard deviation on either side of the mean,
obtained when dividing the <inline-formula><mml:math id="M273" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axes into 18 equally sized bins. In some cases
it is possible to significantly lower the standard deviation by applying a
threshold on one of the parameters to reduce the sample of synthetic spectra
chosen. For example, one would not expect to be able to measure the
<inline-formula><mml:math id="M274" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature if there is little to no emission from this
molecule in the spectrum, so it makes sense to impose a minimum value on
<inline-formula><mml:math id="M275" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> for the retrieval of <inline-formula><mml:math id="M276" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. For
each row of plots in Fig. <xref ref-type="fig" rid="Ch1.F6"/> the white vertical dotted line and
associated hatched area in the panel in either the third column (for the
bottom row) or fourth column (for the top and middle rows) represents the
threshold applied on the intensity of <inline-formula><mml:math id="M277" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M278" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> used to
reduce the standard deviations in the other panels of each row. The lower
standard deviations of the reduced samples are shown with white lines in
panels (a, b, c) for the error on the retrieval of <inline-formula><mml:math id="M279" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> (only
considering spectra with <inline-formula><mml:math id="M280" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>), in panels (e, f, g) for the retrieval of
<inline-formula><mml:math id="M281" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (only considering spectra with <inline-formula><mml:math id="M282" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">3.7</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>), and in panels (i, j, l) for
the retrieval of <inline-formula><mml:math id="M283" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (only considering spectra with
<inline-formula><mml:math id="M284" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>&gt;</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>).
The following sections describe the results of the Monte Carlo simulation
with regards to the retrieval of each atmospheric parameter of interest.</p>
<?pagebreak page323?><sec id="Ch1.S5.SS1">
  <title>Retrieval of OH temperature</title>
      <p id="d1e4904">The fractional error on the retrieval of OH temperature,
<inline-formula><mml:math id="M285" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">ret</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msubsup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:msubsup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
is shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/>a, b, c, and d. The bias, shown
with red circle markers, is very close to being 0, with a standard deviation
that varies between 5 % and 8 %. If we apply a maximum threshold of
<inline-formula><mml:math id="M286" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
represented by the white dotted vertical line in panel (d), the standard
deviation is reduced to between 5 % and 6 %, with no dependence on
<inline-formula><mml:math id="M287" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, <inline-formula><mml:math id="M288" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, or
<inline-formula><mml:math id="M289" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>, as indicated by the white dotted lines in
panels (a), (b), and (c). Indeed, the red lines in panel (d) show that the
spread of errors on the retrieval increases slightly with the <inline-formula><mml:math id="M290" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
intensity. This makes sense since the band structure of <inline-formula><mml:math id="M291" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission
means that it is present in all wavelength bins of the HiTIES detector (see
Fig. <xref ref-type="fig" rid="Ch1.F4"/>); therefore, at high levels of <inline-formula><mml:math id="M292" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission
it is more difficult to distinguish the precise height of the OH lines, with
a standard deviation on the error of <inline-formula><mml:math id="M293" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> retrieval of almost
8 % when <inline-formula><mml:math id="M294" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>.</p>
      <p id="d1e5097">The uncertainties stated here are for a single temperature measurement.
However, HiTIES is capable of providing at least one such observation every 2 min, as long as there are OH lines being recorded, which is the case the
vast majority of the time that the instrument is running. Therefore, with
temporal averaging it is possible to reduce the size of the errors. If one
assumes a typical OH temperature of 200 K, the relative uncertainty of 6 %
revealed by our Monte Carlo simulation translates to an absolute uncertainty
of <inline-formula><mml:math id="M295" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">12</mml:mn></mml:mrow></mml:math></inline-formula> K. Averaging over <inline-formula><mml:math id="M296" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> measurements (representing a time
resolution of 10  min if the individual spectra are integrated over
2 min of observation time) reduces the absolute uncertainty to
<inline-formula><mml:math id="M297" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mi>N</mml:mi></mml:msqrt><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5.4</mml:mn></mml:mrow></mml:math></inline-formula> K. Similarly, temporal averaging over <inline-formula><mml:math id="M298" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula>
observations would reduce the absolute uncertainty on the measured OH
temperature to <inline-formula><mml:math id="M299" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mi>N</mml:mi></mml:msqrt><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.1</mml:mn></mml:mrow></mml:math></inline-formula> K, with a possible time resolution of
30 min.</p>
</sec>
<sec id="Ch1.S5.SS2">
  <?xmltex \opttitle{Retrieval of {$\chem{N_{2}}$} temperature}?><title>Retrieval of <inline-formula><mml:math id="M300" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature</title>
      <p id="d1e5188">The fractional error on the retrieval of <inline-formula><mml:math id="M301" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature,
<inline-formula><mml:math id="M302" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">ret</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
is shown in Fig. <xref ref-type="fig" rid="Ch1.F6"/>e, f, g, and h. The
bias on the retrieval is almost 0 for most values of the input parameters
shown on the <inline-formula><mml:math id="M303" display="inline"><mml:mi>x</mml:mi></mml:math></inline-formula> axes of these panels, as indicated by the red circle markers.
The standard deviations taking into account all 50 000 synthetic spectra,
shown in red lines, are large and very variable, which is due to the
inclusion of spectra for which there is no (and very little) <inline-formula><mml:math id="M304" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission – it
is<?pagebreak page324?> not possible to obtain a temperature measurement in these cases. If we
impose a minimum value on the intensity of <inline-formula><mml:math id="M305" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission of
<inline-formula><mml:math id="M306" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">3.7</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>
(vertical white dotted line in panel h), we can lower the standard deviation
on the fractional error of <inline-formula><mml:math id="M307" display="inline"><mml:mrow><mml:msubsup><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> retrieval to between
3 % and 5 %. The cut-off value of <inline-formula><mml:math id="M308" display="inline"><mml:mrow><mml:mn mathvariant="normal">3.7</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> is
chosen as the location in panel (h) at which the standard deviation dips below
10 %.</p>
      <p id="d1e5343">The very high standard deviations at low <inline-formula><mml:math id="M309" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperatures seen in panel (f)
are due to the fact that the initial value of <inline-formula><mml:math id="M310" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> in the
spectral fitting is set at the lowest temperature. Therefore, the retrievals
included in the left portion of the 2-D histogram include many spectra with
little to no <inline-formula><mml:math id="M311" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission. Indeed, once the lowest values of
<inline-formula><mml:math id="M312" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> are eliminated, the standard deviation is reduced to about
5 % (as shown by the white lines), with little dependency on
<inline-formula><mml:math id="M313" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>.</p>
      <?pagebreak page325?><p id="d1e5413">Panel (f) shows a dependency of the bias on <inline-formula><mml:math id="M314" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> when all 50 000
spectral retrievals are considered. The red circle markers indicate that
there is a bias towards overestimating the lowest <inline-formula><mml:math id="M315" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperatures and
underestimating the highest. Because of the very large spread of retrieved
temperatures, the mean values are skewed at the edges of the temperature
domain. This bias on the mean is eliminated by the reduction of the standard
deviation on the temperature uncertainties when imposing a minimum threshold
on <inline-formula><mml:math id="M316" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>; the white crosses representing the mean values in this
case are all on the line of zero error.</p>
</sec>
<sec id="Ch1.S5.SS3">
  <?xmltex \opttitle{Retrieval of {$\chem{O^{{+}}}$} doublet ratio}?><title>Retrieval of <inline-formula><mml:math id="M317" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublet ratio</title>
      <p id="d1e5475">The fractional error on the retrieval of the intensity ratio of the two
<inline-formula><mml:math id="M318" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets,
<inline-formula><mml:math id="M319" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msubsup><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">ret</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:msubsup><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
is shown in the Fig. <xref ref-type="fig" rid="Ch1.F6"/>i, j, k, and l. The ratio
<inline-formula><mml:math id="M320" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub><mml:mo>=</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup><mml:mn mathvariant="normal">732</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>/</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mrow><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup><mml:mn mathvariant="normal">733</mml:mn><mml:mspace width="0.125em" linebreak="nobreak"/><mml:mi mathvariant="normal">nm</mml:mi></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula> can only
be measured when there is sufficient <inline-formula><mml:math id="M321" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> emission present in the
spectrum to distinguish it from the background. This effect can be seen in
panel (k), in which the red lines show that the standard deviation on the mean
becomes very high as <inline-formula><mml:math id="M322" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>→</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula>. Taking a
minimum threshold on the intensity of <inline-formula><mml:math id="M323" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> emission of
<inline-formula><mml:math id="M324" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">back</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>
brings the standard deviation on the mean below 5 %. The minimum
threshold value is shown by the white vertical dotted line in panel (k) of
Fig. <xref ref-type="fig" rid="Ch1.F6"/>.</p>
      <p id="d1e5663">The error on the retrieval of <inline-formula><mml:math id="M325" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> does not depend on either
<inline-formula><mml:math id="M326" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> or <inline-formula><mml:math id="M327" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>. There is a slight dependency on
<inline-formula><mml:math id="M328" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mrow><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, with the spread of errors being larger when there is
more intense <inline-formula><mml:math id="M329" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission.</p>
</sec>
<sec id="Ch1.S5.SS4">
  <title>Retrieval of OH intensity</title>
      <p id="d1e5739">Figure <xref ref-type="fig" rid="Ch1.F7"/> shows 2-D histograms of the fractional error on the
retrieval of the intensity of OH,
<inline-formula><mml:math id="M330" display="inline"><mml:mrow><mml:mfenced open="(" close=")"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">ret</mml:mi></mml:msubsup><mml:mo>-</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:mfenced><mml:mo>/</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>,
as a function of the intensity of <inline-formula><mml:math id="M331" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> in panel (a) and the intensity
of <inline-formula><mml:math id="M332" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> in panel (b). As in Fig. <xref ref-type="fig" rid="Ch1.F6"/>, the red circle
markers in Fig. <xref ref-type="fig" rid="Ch1.F7"/> represent the mean values and the red
lines are 1 standard deviation on either side of the mean for all 50 000
synthetic spectra. The white lines in panel (a) are the standard
deviation on either side of the mean when only considering spectra with
<inline-formula><mml:math id="M333" display="inline"><mml:mrow><mml:msubsup><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup><mml:mo>&lt;</mml:mo><mml:mn mathvariant="normal">1</mml:mn><mml:mo>×</mml:mo><mml:msubsup><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msubsup></mml:mrow></mml:math></inline-formula>. This
threshold is indicated by the vertical white dotted line and hatched area in
panel (b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F7"><caption><p id="d1e5836">2-D histograms of errors on the retrieval of OH intensity as a
function of the ratio of <inline-formula><mml:math id="M334" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> to OH intensity <bold>(a)</bold> and as a
function of the ratio of <inline-formula><mml:math id="M335" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> to OH intensity <bold>(b)</bold>. Red
circles indicate mean values and red lines are 1 standard deviation on either
side of the mean. The white crosses and lines in panel <bold>(a)</bold> represent the
mean and 1 standard deviation from the mean when only taking into account
spectra with <inline-formula><mml:math id="M336" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensity in the hatched area in panel <bold>(b)</bold>.</p></caption>
          <?xmltex \igopts{width=227.622047pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f07.png"/>

        </fig>

      <p id="d1e5891">Figure <xref ref-type="fig" rid="Ch1.F7"/>a shows that there is no dependency
of the error on the intensity of <inline-formula><mml:math id="M337" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>; i.e. <inline-formula><mml:math id="M338" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> emission does not impede
the retrieval of the OH intensity. The standard deviation can be reduced
from about 7 % to 5 %–6 % by imposing the maximum threshold described above
on the <inline-formula><mml:math id="M339" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensity, since there is a slight dependence of the
<inline-formula><mml:math id="M340" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> retrieval error on <inline-formula><mml:math id="M341" display="inline"><mml:mrow><mml:msub><mml:mi>I</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> (see Fig. <xref ref-type="fig" rid="Ch1.F7"/>b).</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F8" specific-use="star"><caption><p id="d1e5961">Errors on the retrieval of PWV. <bold>(a)</bold> Stacked
histograms of the difference between the retrieved value, PWV<inline-formula><mml:math id="M342" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">ret</mml:mi></mml:msup></mml:math></inline-formula>,
and the theoretical value used to construct the synthetic spectrum,
PWV<inline-formula><mml:math id="M343" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:math></inline-formula>, separated into different ranges of PWV<inline-formula><mml:math id="M344" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:math></inline-formula>. <bold>(b)</bold> The mean values (in green), the median (in orange), and the
standard deviation <inline-formula><mml:math id="M345" display="inline"><mml:mi mathvariant="italic">σ</mml:mi></mml:math></inline-formula> (in purple) for the same ranges of
PWV<inline-formula><mml:math id="M346" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:math></inline-formula> as in <bold>(a)</bold>.</p></caption>
          <?xmltex \igopts{width=312.980315pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f08.png"/>

        </fig>

<?xmltex \hack{\newpage}?>
</sec>
<sec id="Ch1.S5.SS5">
  <title>Retrieval of precipitable water vapour</title>
      <p id="d1e6031">Another parameter of interest to retrieve from HiTIES spectra is the density
of water vapour present in the column of atmosphere above the instrument.
Values of precipitable water vapour (PWV) are obtained by comparing the
absorption of OH lines present in the data due to tropospheric <inline-formula><mml:math id="M347" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">H</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub><mml:mi mathvariant="normal">O</mml:mi></mml:mrow></mml:math></inline-formula> with a
modelled water vapour absorption spectrum <xref ref-type="bibr" rid="bib1.bibx4" id="paren.26"/>. To estimate
how well the spectral fitting process is capable of retrieving values of PWV,
we have determined absolute errors on retrieved precipitable water vapour,
<inline-formula><mml:math id="M348" display="inline"><mml:mrow><mml:mfenced close=")" open="("><mml:mrow><mml:msup><mml:mi mathvariant="normal">PWV</mml:mi><mml:mi mathvariant="normal">ret</mml:mi></mml:msup><mml:mo>-</mml:mo><mml:msup><mml:mi mathvariant="normal">PWV</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:mrow></mml:mfenced></mml:mrow></mml:math></inline-formula>; these errors are
shown in Fig. <xref ref-type="fig" rid="Ch1.F8"/>.</p>
      <p id="d1e6072">Figure <xref ref-type="fig" rid="Ch1.F8"/>a shows histograms of the absolute
error on PWV at different values used to construct the synthetic spectra,
PWV<inline-formula><mml:math id="M349" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:math></inline-formula>. The mean, median, and standard deviation are plotted in
Fig. <xref ref-type="fig" rid="Ch1.F8"/>b as a function of PWV<inline-formula><mml:math id="M350" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:math></inline-formula>. The standard deviation
increases slightly with PWV<inline-formula><mml:math id="M351" display="inline"><mml:msup><mml:mi/><mml:mi mathvariant="normal">in</mml:mi></mml:msup></mml:math></inline-formula>, from about 4 mm at
<inline-formula><mml:math id="M352" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">PWV</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">0</mml:mn></mml:mrow></mml:math></inline-formula> mm to almost 8 mm at
<inline-formula><mml:math id="M353" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">PWV</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> mm. At low water vapour densities, the
distribution is close to normal, but for higher values of PWV, the mean and
the median values diverge slightly; the median of the fractional error
remains close to 0 for all values of PWV. The mean shows a bias towards
overestimating the water vapour density by about 0.8 mm at
<inline-formula><mml:math id="M354" display="inline"><mml:mrow><mml:msup><mml:mi mathvariant="normal">PWV</mml:mi><mml:mi mathvariant="normal">in</mml:mi></mml:msup><mml:mo>=</mml:mo><mml:mn mathvariant="normal">20</mml:mn></mml:mrow></mml:math></inline-formula> mm.</p>
      <p id="d1e6152">Although the standard deviations on PWV retrieval appear quite high, they are
for a single measurement. We can obtain PWV measurements whenever there are
OH lines recorded by the instrument, which is the case in almost all
situations except during times of extremely thick cloud. So we can reduce the
uncertainties on PWV retrievals by<?pagebreak page326?> averaging a number of subsequent
measurements. For example, given a standard deviation of <inline-formula><mml:math id="M355" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> mm;
taking <inline-formula><mml:math id="M356" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> measurements would give an uncertainty of <inline-formula><mml:math id="M357" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mi>N</mml:mi></mml:msqrt><mml:mo>=</mml:mo><mml:mn mathvariant="normal">2.2</mml:mn></mml:mrow></mml:math></inline-formula> mm, taking <inline-formula><mml:math id="M358" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> measurements would give an uncertainty of
<inline-formula><mml:math id="M359" display="inline"><mml:mrow><mml:mi mathvariant="italic">σ</mml:mi><mml:mo>/</mml:mo><mml:msqrt><mml:mi>N</mml:mi></mml:msqrt><mml:mo>=</mml:mo><mml:mn mathvariant="normal">1.3</mml:mn></mml:mrow></mml:math></inline-formula> mm. If individual spectra are each integrated over
2 min of observing time, <inline-formula><mml:math id="M360" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">5</mml:mn></mml:mrow></mml:math></inline-formula> and <inline-formula><mml:math id="M361" display="inline"><mml:mrow><mml:mi>N</mml:mi><mml:mo>=</mml:mo><mml:mn mathvariant="normal">15</mml:mn></mml:mrow></mml:math></inline-formula> measurements correspond to time
resolutions of 10 and 30 min, respectively.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F9" specific-use="star"><caption><p id="d1e6252">2-D histograms of parameter retrieval tests showing the fractional
error on OH temperature retrieval when the synthetic spectra are constructed
using a different source for the transition probabilities of the OH lines
<xref ref-type="bibr" rid="bib1.bibx14" id="paren.27"/> than used in the retrieval process <xref ref-type="bibr" rid="bib1.bibx19" id="paren.28"/>.
Red circles indicate mean values and red lines are 1 standard deviation
on either side of the mean. The white crosses and white solid lines in panels
<bold>(a, b, c)</bold> represent mean values and 1 standard deviation on either side of the
mean, respectively, but only including spectra for the <inline-formula><mml:math id="M362" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensity
within the hatched area shown in panel <bold>(d)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f09.png"/>

        </fig>

</sec>
<sec id="Ch1.S5.SS6">
  <title>Noise considerations</title>
      <p id="d1e6291">We have assumed that the main noise present in HiTIES spectra is shot noise,
neglecting read-out and thermal sources of noise. HiTIES is equipped with an
EMCCD chip, meaning that there is no read-out noise. Thermal noise should be
low since the instrument is cooled to <inline-formula><mml:math id="M363" display="inline"><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">80</mml:mn></mml:mrow></mml:math></inline-formula> <inline-formula><mml:math id="M364" display="inline"><mml:msup><mml:mi/><mml:mo>∘</mml:mo></mml:msup></mml:math></inline-formula>C; however, we have run
additional simulations to estimate an upper limit on noise of thermal origin.
To model thermal noise, we take a Gaussian distribution with a standard
deviation of 62 R nm<inline-formula><mml:math id="M365" display="inline"><mml:msup><mml:mi/><mml:mrow><mml:mo>-</mml:mo><mml:mn mathvariant="normal">1</mml:mn></mml:mrow></mml:msup></mml:math></inline-formula>, corresponding to the mean absolute value of the
residuals of the spectral fit shown in
Fig. <xref ref-type="fig" rid="Ch1.F2"/>b. We then run the Monte Carlo simulation
including both shot and thermal noise. The results are qualitatively
identical to those presented in the previous sections, with uncertainty
values increased by about 1 %. This is an upper limit since it assumes that
the level of the residuals is caused by thermal noise alone.</p>

      <?xmltex \floatpos{t}?><fig id="Ch1.F10" specific-use="star"><caption><p id="d1e6329">2-D histograms of parameter retrieval tests showing the fractional
error on OH temperature retrieval when the synthetic spectra are constructed
using a different source for the energy levels of excited OH
<xref ref-type="bibr" rid="bib1.bibx7" id="paren.29"/> than used in the retrieval process <xref ref-type="bibr" rid="bib1.bibx13" id="paren.30"/>.
Red circles indicate mean values and red lines are 1 standard deviation
on either side of the mean. The white crosses and white solid lines in
panels <bold>(a, b, c)</bold> represent mean values and 1 standard deviation on either side of the
mean, respectively, but only including spectra for the <inline-formula><mml:math id="M366" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensity
within the hatched area shown in panel <bold>(d)</bold>.</p></caption>
          <?xmltex \igopts{width=398.338583pt}?><graphic xlink:href="https://gi.copernicus.org/articles/7/317/2018/gi-7-317-2018-f10.png"/>

        </fig>

</sec>
</sec>
<sec id="Ch1.S6">
  <title>Assessment of uncertainties on OH quantum numbers</title>
      <p id="d1e6368">The OH temperature measurements depend on possessing correct values of
transition probabilities and energy terms. In particular, past studies have
shown large differences in OH temperatures derived using different sources
for the transition probabilities <xref ref-type="bibr" rid="bib1.bibx22" id="paren.31"><named-content content-type="pre">e.g.</named-content></xref>. To assess this
effect on our retrieval process, we have constructed 10 000 synthetic
spectra in the same manner as described in Sect. <xref ref-type="sec" rid="Ch1.S5"/>,
except that they are constructed using transition probabilities from
<xref ref-type="bibr" rid="bib1.bibx14" id="text.32"/>, whereas the retrieval process assumes transition
probabilities from <xref ref-type="bibr" rid="bib1.bibx19" id="text.33"/>. The results of this Monte Carlo
simulation are shown in Fig. <xref ref-type="fig" rid="Ch1.F9"/>, in which the
same parameters are plotted as in the top row of Fig. <xref ref-type="fig" rid="Ch1.F6"/>;
namely, the fractional error on the OH temperature is plotted against the OH
temperature (panel a), the <inline-formula><mml:math id="M367" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature (panel b), the <inline-formula><mml:math id="M368" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> intensity
(panel c), and the <inline-formula><mml:math id="M369" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> intensity (panel d). The 2-D histograms in
Fig. <xref ref-type="fig" rid="Ch1.F9"/> are very similar to those in the top row
of Fig. <xref ref-type="fig" rid="Ch1.F6"/>, in which the transition probabilities used both in
constructing the synthetic spectra and in the retrieval process are from
<xref ref-type="bibr" rid="bib1.bibx19" id="text.34"/>. The only difference is an offset of about 3 % to 4 %,
corresponding to a difference in temperature of 6 to 8 K, assuming an OH
temperature of around 200 K.</p>
      <p id="d1e6430">We take the same approach to ascertain the effect on OH temperatures of
different sources for the OH energy levels. The fractional errors on the
retrieval of T<inline-formula><mml:math id="M370" display="inline"><mml:msub><mml:mi/><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:math></inline-formula> are plotted in
Fig. <xref ref-type="fig" rid="Ch1.F10"/> by
constructing synthetic spectra with energy terms from <xref ref-type="bibr" rid="bib1.bibx7" id="text.35"/> and
assuming <xref ref-type="bibr" rid="bib1.bibx13" id="text.36"/> values in the retrieval process. The mean
values also show an offset from the 0 error line, but much smaller than for
different transition probabilities, of about 0.5 % to 1 %, equivalent to 1 to
2 K at 200 K.</p>
</sec>
<sec id="Ch1.S7" sec-type="conclusions">
  <title>Conclusions</title>
      <?pagebreak page327?><p id="d1e6456">We have developed a new spectral fitting method
that allows us to extract the intensity of simultaneous emissions in HiTIES
spectra. These emissions – OH airglow, auroral <inline-formula><mml:math id="M371" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula>, and <inline-formula><mml:math id="M372" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> – originate
from different atmospheric layers and their properties inform us of the state
of the upper polar atmosphere. In particular, combining our spectral fitting
method with a temperature retrieval process allows us to estimate neutral
temperatures at different altitudes and the atmospheric column
density of water vapour. In this paper, using a Monte Carlo simulation to
retrieve the known parameters of synthetic spectra, we have shown the domains
over which our spectral fitting and temperature retrieval processes are
successful.</p>
      <p id="d1e6481">The Monte Carlo simulation shows that we can correctly retrieve OH
temperatures, as long as any <inline-formula><mml:math id="M373" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission is not too bright. Indeed, we
find that the distribution of fractional errors on <inline-formula><mml:math id="M374" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> has a
standard deviation of less than 6 % when the maximum intensity of the <inline-formula><mml:math id="M375" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
spectrum is less than the peak intensity of the strongest OH emission line
seen in HiTIES, OH(8-3) P<inline-formula><mml:math id="M376" display="inline"><mml:msub><mml:mi/><mml:mn mathvariant="normal">1</mml:mn></mml:msub></mml:math></inline-formula>(3). This uncertainty corresponds to about 12 K
on an OH temperature of 200 K, obtained from a single spectrum typically
integrated over 2 min of observing time. Since OH emission is present in
almost all of our data, we can improve the errors on <inline-formula><mml:math id="M377" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> by
temporally averaging multiple observations. Thus, combining 15 consecutive
2 min measurements would reduce the absolute uncertainty from 12  to
3.1 K.</p>
      <?pagebreak page328?><p id="d1e6537">We have also evaluated the magnitude of errors on <inline-formula><mml:math id="M378" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mi mathvariant="normal">OH</mml:mi></mml:msub></mml:mrow></mml:math></inline-formula> that occurs
from uncertainties in the OH transition probabilities. The offset measured
between temperatures obtained using transition probabilities from
<xref ref-type="bibr" rid="bib1.bibx19" id="text.37"/> and <xref ref-type="bibr" rid="bib1.bibx14" id="text.38"/> is about 4 % on average (roughly
8 K), reinforcing the fact that any comparisons between different OH
temperature datasets must take this into account.</p>
      <p id="d1e6557">When there is sufficient <inline-formula><mml:math id="M379" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission present, we can successfully
determine the <inline-formula><mml:math id="M380" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> temperature. The standard deviation of the distribution
of fractional errors on <inline-formula><mml:math id="M381" display="inline"><mml:mrow><mml:msub><mml:mi>T</mml:mi><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula> is between 3 % and 5 % when the
maximum intensity of the <inline-formula><mml:math id="M382" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> spectrum is greater than 3.7 times the
background level. In the spectral fitting procedure and the Monte Carlo
simulations performed in this study, we have assumed that all of the <inline-formula><mml:math id="M383" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula>
emission in the HiTIES spectrum is produced at a single temperature. This is
not necessarily the case, especially if the <inline-formula><mml:math id="M384" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> layer is extended in
altitude. Therefore, in future we intend to modify our spectral fitting
method to take into account the possible presence of <inline-formula><mml:math id="M385" display="inline"><mml:mrow class="chem"><mml:msub><mml:mi mathvariant="normal">N</mml:mi><mml:mn mathvariant="normal">2</mml:mn></mml:msub></mml:mrow></mml:math></inline-formula> emission at
different temperatures in a single spectrum.</p>
      <p id="d1e6643"><xref ref-type="bibr" rid="bib1.bibx29" id="text.39"/> showed that the ratio of the two <inline-formula><mml:math id="M386" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublets
observed by HiTIES at 732 and 733 nm can be used as a measure of the neutral
temperature in the F-region ionosphere. We can determine this ratio,
<inline-formula><mml:math id="M387" display="inline"><mml:mrow><mml:msub><mml:mi>R</mml:mi><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:msub></mml:mrow></mml:math></inline-formula>, with a distribution of fractional errors of less than
5 % when the peak of the 732 nm <inline-formula><mml:math id="M388" display="inline"><mml:mrow class="chem"><mml:msup><mml:mi mathvariant="normal">O</mml:mi><mml:mo>+</mml:mo></mml:msup></mml:mrow></mml:math></inline-formula> doublet is greater than 6
times the background emission.</p>
      <p id="d1e6685">As a by-product of the spectral fitting method, we have been able to estimate
the amount of water vapour in the column of atmosphere above the HiTIES
instrument: the precipitable water vapour or PWV. When OH lines are present
in our data, which is almost at all times that the instrument is running, we
can obtain high-cadence (at least every 10 min) measurements of the PWV.</p>
      <p id="d1e6688">In a number of follow-up studies, we will make use of the spectral fitting
and temperature retrieval methods demonstrated here to explore trends in
upper atmospheric neutral temperatures in the HiTIES dataset. As a first
step, we shall compare OH(8-3) temperatures measured by HiTIES with OH(6-2)
temperatures from the Silverbullet instrument operated by the University
Centre in Svalbard (UNIS) <xref ref-type="bibr" rid="bib1.bibx27 bib1.bibx9" id="paren.40"><named-content content-type="pre">e.g.</named-content></xref>, also
located at the Kjell Henriksen Observatory, and with OH temperatures derived
from the SABER instrument onboard the TIMED satellite.</p>
</sec>

      
      </body>
    <back><notes notes-type="dataavailability">

      <p id="d1e6700">Recent quick-look keograms
from the Spectrographic Imaging Facility (SIF) are available at <uri>http://sif.unis.no</uri> (last access:
28 November 2018). To access any
data, please contact the authors.</p>
  </notes><notes notes-type="competinginterests">

      <p id="d1e6709">The authors declare that they have no conflict of
interest.</p>
  </notes><ack><title>Acknowledgements</title><p id="d1e6715">Joshua M. Chadney and Daniel K. Whiter are funded by the United Kingdom
Natural Environment Research Council (NERC) under grant NE/N004051/1. We
would like to thank the staff at the University Centre in Svalbard (UNIS) for
their support and the use of their facilities. The Spectrographic Imaging
Facility (SIF) was funded by the United Kingdom Particle Physics and
Astronomy Research Council (PPARC) and NERC, and it is a joint project between
University College London and the University of Southampton.<?xmltex \hack{\newline}?><?xmltex \hack{\newline}?> Edited by: Maria Genzer <?xmltex \hack{\newline}?> Reviewed by: two
anonymous referees</p></ack><ref-list>
    <title>References</title>

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<abstract-html><p>We have developed a spectral fitting method to retrieve upper atmospheric
parameters at multiple altitudes simultaneously during times of aurora,
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vapour. We use the method to separate airglow OH emissions from auroral
O<sup>+</sup> and N<sub>2</sub> in observations between 725 and 740&thinsp;nm using the
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In this paper, we describe our new method and show the results of Monte Carlo
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spectral fitting method and provide an indication of uncertainties on
the retrieval of each atmospheric parameter. We show that the method allows
for the
retrieval of OH temperatures with an uncertainty of 6&thinsp;% when
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intensity is high. We can determine the intensity ratio between the
O<sup>+</sup> doublets at 732 and 733&thinsp;nm (which is a function of temperature)
with an uncertainty of 5&thinsp;%.</p></abstract-html>
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