Articles | Volume 11, issue 2
Geosci. Instrum. Method. Data Syst., 11, 413–433, 2022
Geosci. Instrum. Method. Data Syst., 11, 413–433, 2022
Research article
30 Nov 2022
Research article | 30 Nov 2022

Design and operation of a long-term monitoring system for spectral electrical impedance tomography (sEIT)

Design and operation of a long-term monitoring system for spectral electrical impedance tomography (sEIT)
Maximilian Weigand1, Egon Zimmermann2, Valentin Michels1, Johan Alexander Huisman3, and Andreas Kemna1 Maximilian Weigand et al.
  • 1Geophysics Section, Institute of Geosciences, University of Bonn, Bonn, Germany
  • 2Electronic Systems (ZEA 2), Central Institute for Engineering, Electronics, and Analytics, Forschungszentrum Jülich GmbH, Jülich, Germany
  • 3Agrosphere (IBG 3), Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, Jülich, Germany

Correspondence: Maximilian Weigand (


Spectral electrical impedance tomography (sEIT) is increasingly used to characterise the structure of subsurface systems using measurements in the megahertz to kilohertz range. Additionally, hydrogeophysical and biogeophysical processes are characterised and monitored using sEIT. The method combines multiple, spatially distributed, spectroscopic measurements with tomographic inversion algorithms to obtain images of the complex electrical resistivity distribution in the subsurface at various frequencies. Spectral polarisation measurements provide additional information about the systems under investigation and can be used to reduce ambiguities that occur if only the in-phase resistivity values are analysed. However, spectral impedance measurements are very sensitive to details of the measurement setup as well as to external noise and error components. Despite promising technical progress in improving measurement quality as well as progress in the characterisation and understanding of static polarisation signatures of the subsurface, long-term (i.e. multi-month to multi-year) monitoring attempts with fixed setups are still rare. Yet, measurement targets often show inherent non-stationarity that would require monitoring for a proper system characterisation. With the aim of improving operating foundations for similar endeavours, we here report on the design and field deployment of a permanently installed monitoring system for sEIT data. The specific aim of this monitoring installation is the characterisation of crop root evolution over a full growing season, requiring multiple measurements per day over multiple months to capture relevant system dynamics. In this contribution, we discuss the general layout and design of the monitoring setup, including the data acquisition system, additional on-site equipment, required corrections to improve data quality for high frequencies, data management and remote-processing facilities used to analyse the measured data. The choice and installation of electrodes, cables and measurement configurations are discussed and quality parameters are used for the continuous assessment of system functioning and data quality. Exemplary analysis results of the first season of operation highlight the importance of continuous quality control. It is also found that proper cable elevation decreased capacitive leakage currents and in combination with the correction of inductive effects led to consistent tomographic results up to 1 kHz measurement frequency. Overall, the successful operation of an sEIT monitoring system over multiple months with multiple daily tomographic measurements was achieved.

1 Introduction

Among non- or minimally invasive methods to characterise the subsurface, electrical methods have the advantage of being relatively inexpensive and easy to use, applicable both at the laboratory and the field scale, and sensitive to a wide variety of lithological, hydrogeophysical and biological properties and processes (e.g. Kemna et al.2012; Kessouri et al.2019; Cimpoiaşu et al.2020, and references therein). Unfortunately the electrical signals are not unambiguous and often this prevents a clear interpretation of the measurements (e.g. Binley and Slater2020). Building upon the established electrical resistivity tomography (ERT) method, spectral electrical impedance tomography (sEIT) captures the subsurface distribution of the frequency-dependent complex electrical conductivity in the millihertz to kilohertz frequency range. The complex electrical conductivity describes both in-phase conduction and out-of-phase polarisation, which are two independent material properties. As such, sEIT combines the imaging capabilities of ERT with the improved information content of spectral induced polarisation (SIP), which is sometimes also referred to as electrical impedance spectroscopy (EIS). Therefore sEIT results can significantly reduce the ambiguities that occur during the interpretation of conductivity (or its inverse, resistivity) alone and improve structural and functional characterisation results.

Multiple sources of polarisation have been identified for frequencies below 1 MHz, including polarisation of the electrical double layer (EDL), membrane polarisation and Maxwell–Wagner polarisation (e.g. Kemna et al.2012, and references therein). Central to all these sources of polarisation is the movement and accumulation of charge carriers in external electric fields, leading to relaxation phenomena characterised by phase shifts between excitation and response signals. Depending on the subject of investigation, considering the polarisation at different frequencies (i.e. spectral measurements) can enhance the information content with respect to certain physical properties or processes.

sEIT instrumentation has seen a steady development in the past decade (e.g. Zimmermann et al.2008a, b; Xi et al.2015; He et al.2016; Radic2016, 2021). Development has shifted from the design of the systems themselves to data error corrections that improve measurement quality, including accounting for capacitive leakage currents and associated electrical pathways and the correction of inductive high-frequency effects (e.g. Zhao et al.2013; Huisman et al.2015; Zimmermann et al.2019; Wang et al.2020b). The nature of capacitive effects is now better understood, which reduces measurement errors in sEIT measurements (Schmutz et al.2014; Flores Orozco et al.2021).

Several studies have shown the applicability of sEIT at the field scale (e.g. Kemna2000; Flores Orozco et al.2012a; Günther and Martin2016; Maurya et al.2018; Mudler et al.2022). Yet, most of these studies only analysed frequencies well below 1 kHz. In addition, multiple monitoring studies have been reported. Here, most studies involved larger time spans between measurements (days to weeks) (e.g. Williams et al.2009; Commer et al.2011; Flores Orozco et al.2011, 2013), although Kelter et al. (2018) conducted a short-term infiltration experiment with smaller measurement intervals. As pointed out by Kelter et al. (2018), reliably acquiring sEIT data in the field is still challenging and time-consuming. Yet, the potential of fixed monitoring setups with high temporal resolution and a wide spectral bandwidth is high, as these two characteristics directly control which processes can be captured and differentiated.

With the aim of progressing the state of the art for sEIT monitoring, we present the installation and operation details of a permanently installed sEIT field setup potentially capable of multi-year continuous operations. The scientific motivation for our sEIT monitoring is rooted in the field of biogeophysics, where a high sensitivity of electrical signatures to biogeochemical structures and processes has been identified (e.g. Atekwana and Slater2009; Kessouri et al.2019). Based on previous laboratory findings that showed the capability of sEIT to directly image crop roots (Weigand and Kemna2017, 2019), we anticipate that the spatio-temporal evolution of crop roots under field conditions can be characterised if updated measurement and processing procedures that yield reliable high-bandwidth spectral polarisation monitoring information are implemented. While the presentation and discussion of the different technical aspects is based on monitoring data collected in 2018 at an agricultural test site with the ultimate goal of imaging the distribution and characterising the function of crop (maize) roots, the interpretation of the time-lapse sEIT imaging results in this context is not within the scope of the present study but will be addressed in a future publication.

The remaining text is structured as follows. The next section will briefly introduce procedures for multi-dimensional impedance measurements, after which the experimental setup is presented. The sEIT monitoring system is then described in detail, including processing facilities and procedures. In addition, a novel inductive error correction procedure for complex cable arrangements is presented and applied to the measured sEIT data. After this, exemplary results for a selected monitoring period are shown to highlight the importance of using quality control parameters for continuous supervision and assessment of such monitoring systems. In addition, the spectral and temporal consistency of the tomographic inversion results will be illustrated. Finally, the overall system will be discussed in light of potential scientific use, and future avenues for development will be presented.

2 Multi-dimensional impedance measurements

sEIT measurements are commonly conducted using four-electrode measurements. In each measurement two electrodes are used for current injection and the other two electrodes are used to measure the potential difference (voltage) in the resulting electrical potential distribution in the subsurface (e.g. Everett2013; Binley and Slater2020). The four-electrode spread is used to reduce effects caused by the interface resistances between electrodes and soil (i.e. the contact resistances). Measurements can be conducted in the time or the frequency domain, where time-domain measurements use rectangular wave forms for resistivity and time-domain-induced polarisation (TDIP) measurements, while sinusoidal wave forms in the millihertz to kilohertz range are typically used for frequency-domain induced-polarisation (FDIP) measurements, which include EIS/SIP and sEIT measurements. The present study analyses frequency-domain sEIT measurements in the frequency range between 0.1 Hz and 1 kHz. Traditionally, a large number of differently located four-electrode measurements is processed by employing error-weighted gradient-based tomographic inversion algorithms, producing a 2D or 3D complex conductivity distribution of the subsurface (e.g. LaBrecque et al.1996; Kemna2000; Binley and Kemna2005; Rücker et al.2017).

Tomographic inversion requires careful data assessment as the underlying inversion algorithms assume uncorrelated, normally distributed noise, and any outliers or highly correlated noise components should be removed, or at least reduced, as much as possible. Correspondingly, data error models have been developed both for ERT (e.g. LaBrecque et al.1996; Koestel et al.2008) and for sEIT (Flores Orozco et al.2012b), which typically rely on the analysis of normal and reciprocal measurements. Normal and reciprocal measurements hereby refer to measurements where current and voltage dipoles are switched. Theoretically, such a switch yields the same impedance measurement, and thus the difference can be used as a proxy for the noise component. In the following, an error model can be fitted to a suitably large number of normal–reciprocal pairs to quantify the error estimates of the data points for the tomographic inversion. Yet, for the normal–reciprocal difference to be a useful proxy for data noise, a few assumptions must be made: systematic, non-Gaussian errors must be kept to a minimum and normal and reciprocal measurements must be assumed to originate in the same random distribution ensemble. The latter assumption is often not valid for differently sized current and voltage dipoles, which potentially lead to different signal-to-noise ratios for measurements of current and voltage. In such cases, other, often empirical, approaches must be employed to find suitable data error estimates for the inversion.

In general, data noise and systematic errors should be reduced and prevented as much as possible. In cases where large outliers are expected (i.e. non-normally distributed noise dominates), often so-called “robust” inversion approaches are used (e.g. LaBrecque and Ward1990; Kemna2000). These approaches use data misfit functionals different from the least-squares misfit used here and can thereby better accommodate large outliers. Although this may provide qualitatively better inversion results, this strategy can lead to over-smoothing of imaging results in cases with small number of outliers and therefore can prevent quantitative data analysis. When quantitative and robust phase polarisation values are to be recovered from noisy measurement environments, proper data quality control and filtering are the only options to reduce systematic noise components that could introduce bias into the inversion results. However, integrated data quality control schemes remain rare, with only few examples known for TDIP (e.g. Mitchell and Oldenburg2016; Flores Orozco et al.2018) and for FDIP (e.g. Flores Orozco et al.2013; Katona et al.2021).

Inversion results presented in this study were obtained using CRTomo (Kemna2000) following a two-step approach. First, a fully complex inversion is implemented minimising the following objective function:

(1) Ψ = Ψ d + λ Ψ m = W ^ m ( d ^ - f ^ ( m ^ ) ) L 2 2 + λ R m m ^ L 2 2 ,

where Ψd is the data misfit term consisting of the error-weighted residuals and Ψm is the model objective function regularising the inversion problem in the form of a model smoothness constraint. The complex data vector d^ consists of logarithmically transformed complex transfer conductances, f^ is the forward response for a given model vector m^ of log-transformed complex conductivities, and W^m is the complex diagonal data-weighting matrix containing the reciprocal complex data error estimates 1/σ^i on the main diagonal. Rm is the regularisation matrix that imposes a 2D smoothness constraint on the model parameters. It should be noted that the use of log-transformed complex conductivities implies an inversion of log magnitudes and linear phase values. In a second step, a real-valued, phase-only inversion with fixed conductivity magnitude values, the so-called final phase improvement (FPI), is used to improve the estimates for the phase (details of this procedure can be found in Kemna2000). Note that the interface for the inversion code is formulated in complex impedances, i.e. the inverse of the complex conductances, and therefore the data errors are discussed in terms of impedance values later on. Data inversions were performed independently for each frequency and point in time, as was done in other studies (e.g. Kemna2000). It is, however, possible to impose additional constraints along the time (e.g. Karaoulis et al.2013) or frequency dimension (e.g. Commer et al.2011; Kemna et al.2014; Günther and Martin2016) to smoothen noise components between neighbouring time steps or frequencies, respectively.

3 The Selhausen rhizotron facility

The sEIT monitoring system described in this study is part of the Selhausen field rhizotron facility described in detail in Cai et al. (2016). The facility consists of an agricultural test field of 9.75 m width and 7 m length with a wooden container installed in an excavated pit running along the width down to a depth of 2.25 m at one side of the field (Fig. 1). The test field is divided into three segments of 3.25 m width each, with different agricultural treatments applied to each segment. As the focus of this study is on the technical aspects of the monitoring system, we do not discuss agricultural treatments further here. Various sensors have been installed on this side of the field for hydrological and biological monitoring. The installed sensors include combined water–matrix potential and temperature sensors at three horizontal and six vertical positions (at −10, −20, −40, −60, −80, −120 cm depths) (Cai et al.2016). Also, time-domain reflectometry (TDR) probes for water content measurements are located at 12 different horizontal positions along the 6 vertical positions mentioned previously. Optical transparent tubes with 7 m length, used for optical root observations, are also located at nine horizontal positions along the same six vertical positions (not further discussed here; see Cai et al.2016 for further details). In addition, a weather station providing environmental information is located within 10 m of the setup. The facility further provides mains power and a high-bandwidth internet connection. Therefore it is well suited for an sEIT monitoring system aimed at biogeophysical characterisation of agricultural fields, and the additional sensor data will be used in a future study to establish connections between the electrical sEIT results and root growth dynamics.

Figure 1Overview of the field site, including location of measurement system (in a wooden container installed in an excavated pit next to the measurement field), the cable layout of the sEIT system, electrode positions, and calibration cable layout temporarily used for measurement of inductive calibration data (discussed in Sect. 4.3). Plots 1–3 denote different agricultural treatments of the field, not further discussed here.


4 Design of the monitoring system

The sEIT monitoring system is comprised of a 40-electrode profile with 25 cm electrode spacing (Fig. 1). The system consists of two interconnected parts: an on-site cluster of hardware used for the sEIT measurements and data storage and a remote computer network used for the final data archiving and processing (Fig. 2). The on-site part is comprised of the sEIT measurement system with attached electrodes and two minicomputers used as a GPS (Global Positioning System)-based time server and data server, respectively. System times are set to UTC to prevent any time conversion issues. The on-site system is connected to the remote site using two internet connections: a broadband internet link provided on site and an additional connection through a mobile wireless broadband connected VPN (virtual private network) network. This redundancy in connections was required to deal with temporary malfunctioning of the connection equipment. The remote site consists of a RAID (Redundant Array of Independent Disks)-6 protected file server and associated independent backup solutions, a Postgresql database server, and multiple multi-core computers controlled by a task queuing system for computing-intensive tasks. While remote supervision is an integral part of the system, it can also be operated semi-autonomously in case of connection loss. The system has sufficient data storage and backup capacity to operate independently for a few weeks, which allows for flexible scheduling of maintenance visits.

Figure 2Schematic overview of sEIT monitoring system. The system is divided into two major parts: an on-site (a) and a remote (b) one.


4.1 sEIT measurement system

The sEIT data acquisition system is described in Zimmermann et al. (2008b) and Zimmermann et al. (2019). It is a 40-channel sEIT system that measures the electrical impedance in the frequency range between 1 mHz and 45 kHz. For each current injection dipole, time series of the potentials of all remaining 38 electrodes with regard to system ground are measured. For this, each electrode is equipped with a small pre-amplifier module to reduce the capacitive load and increase input impedances to 500 GΩ. Crosstalk between cables is minimised by using shielded cables. Subsequently, the potential signal at the excitation frequency is extracted using a digital lock-in approach, which results in three-point transfer impedances for each current injection and each potential electrode. From these “three-point” measurements, arbitrary four-point configurations are computed by superposition for all of the specified current injection dipoles. Note that the error of each four-point configuration is thus only determined by the errors of the corresponding two three-point measurements. As the noise components that are captured individually in the three-point measurements are also present for direct differential four-point measurements, similar effective noise levels for both approaches can be expected. However, when three-point (to ground) measurement are used, individual common-mode errors can be drastically reduced, effectively leading to much smaller overall data errors (e.g. Zimmermann et al.2008b). The potential measurements relative to system ground require the isolation of the system from the power grid by means of an isolating transformer to prevent ground loops. A symmetric voltage of ±9 V (18 Vpp) is used for current injection, and two shunt-resistances of 1 kΩ are used for current measurement at each of the two current electrodes. While the system could in theory support an excitation voltage of 10 V, a lower excitation voltage was chosen to prevent ADC (analog-to-digital converter) saturation. In order to enable autonomous measurements, the sEIT system was modified to enable daily calibration measurements (discussed in Sect. 4.3) without any user interaction and physical access to the system.

Due to the specific position in the current path, the shunt resistances for each current channel form voltage dividers with respect to the subsurface (dominated by the contact resistances), effectively distributing the applied voltage on shunt resistors and the subsurface in a series circuit. Therefore, the shunt resistances need to be roughly adjusted to the encountered contact resistances, as discussed in Zimmermann (2011). If the selected shunt resistances are too small, the measured voltage drops at the shunt resistors will be small, thereby reducing the precision of the current measurements. If the shunt resistances are too large, this will lead to unnecessarily large voltage drops over the shunt resistors and more importantly a reduced voltage actually applied to the subsurface. The choice of 1 kΩ for the shunt resistors turned out to be an appropriate choice for the measurement time span discussed in this study, since it roughly matched the encountered range of current-path resistances, comprised of contact resistances between electrodes and soil and the soil resistance itself. This in turn lead to an equal distribution of the signal strength to shunt resistances (i.e. current measurements) and soil (i.e. voltage measurements).

4.2 Design of electrode and cable layout

Medical-grade V4 steel screws were used as electrodes for both current injection and potential measurements (Fig. 3). While the use of non-polarisable electrodes would have been preferred, no sufficient solution for long-term measurements was found and steel electrodes were deemed a good compromise between long-term stability and the ability to measure polarisation signatures. Long-term suitability entails non-leakage of electrode fluids, which, for example, is not the case for Cu−CuSO4 unpolarisable electrodes sometimes used for SIP/sEIT measurements. It also requires sufficient contact with the soil even in dry conditions and stable internal electrical characteristics. The steel screws are 18 cm long with a diameter of 1 cm. The area of current injection was limited to the lower 5 cm of the electrode by covering the upper 12 cm of each screw (plus 1 cm for screw head) with two layers of shrinking tube (Fig. 3). By only exposing 5 cm of the electrode to the soil, we aimed to stay as close as possible to the point-electrode assumption used in modelling and inversion (for a discussion of this assumption, see Rücker and Günther2011), while ensuring sufficient soil contact to keep the contact resistance in an acceptable range also in dry conditions.

Figure 3Stainless-steel electrode used for sEIT measurements. Scale is in centimetres.


Figure 4Installation of electrodes, electrode modules and connecting cables. (a) Installation in 2017. (b) Installation in 2018.


In the first monitoring period (growing season 2017), electrodes were driven 5 cm into the soil to fully connect the bare part of the electrode with the subsurface (Fig. 4, left). The connecting cables were bundled with cable ties and routed to the measurement system as a cable bundle lying on the soil surface. In the second monitoring period (growing season 2018), the setup was modified and electrodes were driven 15 cm into the ground, with only 3 cm remaining above the surface. As such, the bare part of the electrode started at a depth of 10 cm and reached down to 15 cm depth. This was represented as point electrodes located at 12.5 cm depth in the finite-element mesh used for modelling and inversion. Cables were bundled and sheltered against the environment in rain gutters, which were elevated from the ground using Styropor blocks with a thickness of 10 cm (Fig. 4, right). Excess cable lengths were arranged in elongated loops parallel to the cables within the rain gutters to ensure that the electromagnetic induction effects of these excess cable lengths cancelled each other out as much as possible.

4.3 Calibration and correction measurements

Based on previous work, sEIT measurements were corrected daily for system drift, variable ADC channel gains, signal propagation and current channel capacitances, as presented and discussed in Zimmermann et al. (2008b), Zimmermann (2011) and Zimmermann et al. (2019). In addition, inductive cable-to-cable effects were corrected using a modified version of the correction procedure previously developed for borehole (Zhao et al.2013, 2015) and surface EIT applications (Zimmermann et al.2019; Wang et al.2020b), which will be presented in detail below. Capacitances between all cables and system ground were also measured daily to assess the potential for leakage currents and as an indicator of system health (e.g. Zimmermann et al.2019). While these capacitances were not used for the correction of data in this study, they can potentially be integrated into forward modelling algorithms to account for these additional current pathways.

4.3.1 Correction of inductive effects

Inductive effects on electrical impedance measurements are two-fold. First, mutual impedances between the cables of the measurement system induce corresponding voltages directly in the potential measurement cables. Second, currents induced in the soil by inductive effects lead to a change in the earth response measured at the potential electrodes. We here deal only with the first effect, as this effect is strongest for the short electrode layouts used in this study. A short discussion of the strength of the earth response can be found in Zhao et al. (2015) and Wang et al. (2020b).

Following Zhao et al. (2015), the effect of the mutual cable inductance L appears as a purely imaginary component jωL in the measured complex transfer impedance Z^t at angular frequency ω using current electrodes A and B and potential electrodes M and N:

(2) Z ^ t ABMN ( ω ) = U ^ MN ( ω ) I ^ AB ( ω ) = Z ^ soil ( ω ) + j ω L ABMN ,

where I^AB is the injected current between electrodes A and B, U^MN is the measured voltage between the electrodes M and N, and j is the imaginary number. As the cable inductance acts on the transfer impedance, one direct consequence is that measurement configurations with higher geometric factors are potentially affected more strongly by the mutual cable inductance due to the corresponding decrease in transfer resistance. The mutual inductance LABMN of a four-point spread is computed by superposition of the mutual inductances of all involved cable pairs, accounting for current flow direction by changing signs accordingly:

(3) L ABMN = ( L AM - L AN ) - ( L BM - L BN ) .

For each cable pair (C1, C2), the mutual inductance can be computed by numerically evaluating the Neumann integral along the involved cable paths s1 and s2 (e.g. Sunde1968; Henke2015):

(4) L = μ 4 π C 1 _ start C 1 _ end C 2 _ start C 2 _ end d s 1 d s 2 r ,

where μ is the magnetic permeability and r is the distance between any two cable elements. The start position of each cable i(1,2) is denoted by Ci_start and the end position by Ci_end. Due to the inverse dependence on r, errors in the spatial location of cables affect the results more strongly for smaller separations between the cables. For the sEIT setup used here, the exact positions of the individual cables within the cable bundles were not precisely known, which introduces uncertainty in the determination of the mutual inductance with Eq. (4). To improve the determination of the mutual cable inductances, an additional calibration measurement was conducted to capture all effects of the cable bundles not properly accounted for in the numerical simulations with Eq. (4). The calibration measurements used additional cables for short-circuit measurements and will be described in detail in the next section. Numerical simulations with the original and the calibration setup were then used in conjunction with the experimental results to obtain improved estimates of the mutual inductances of all cable pairs of the measurement setup. If we denote LC1C2num,measured as the numerically determined mutual inductance between two cables C1 and C2 in the measurement setup, LC1C2num,calib as the numerically determined mutual inductance between those cables in the calibration setup and LC1C2meas,calib as the experimentally determined mutual inductance between both cables in the calibration setup, we estimate the corrected mutual inductance between two cables using

(5) L C 1 C 2 = L C 1 C 2 num , measured + L C 1 C 2 meas , calib - L C 1 C 2 num , calib .

The second term in Eq. (5) represents the difference between the measured and modelled mutual inductance for the calibration setup. It is assumed that this difference is mainly affected by the uncertainty in the cable positioning within the cable bundles and can thus be used to improve the numerically determined mutual inductance between the cables in the measurement setup.

For easier handling of the mutual inductances, they are summarised in a pole–pole matrix (Zhao et al.2015) which represents all possible combinations of cables for the 40-cable setup:

(6) L 40 × 40 = 0 L 1 , 2 L 1 , 39 L 1 , 40 L 2 , 1 0 L 2 , 39 L 2 , 40 L 39 , 1 L 39 , 2 0 L 39 , 40 L 40 , 1 0 L 40 , 39 0 .

This representation simplifies the computation of the mutual inductance of arbitrary four-point configurations using Eq. (3) and retains the full potential of the system with respect to the voltage measurements relative to ground. Self-inductances for the cables are ignored at this point (hence the zero entries on the diagonal) as they are not relevant for the four-point sEIT measurements.

4.3.2 Calibration measurements for inductive correction

Following Zhao et al. (2015), calibration measurements were made by adding a short-circuit cable that connected all electrodes to the system ground while ensuring that no contact to the soil or the electrode was established (Fig. 1, blue line). The actual measurement setup remained unchanged during this calibration measurement. The cable used for short-circuiting was connected to the system ground while keeping a large separation to the electrodes and the other cables (see Fig. 1, blue line). Therefore, any current injected using one channel could flow back to the system ground through this cable. For the calibration, current was subsequently injected into all 40 electrode channels, and potentials towards system ground were measured for all remaining 39 channels. These potential measurements captured the inductive effects on each channel due to current injection at all other channels. This set of calibration measurements consists of 4039=1560 individual measurements of the transfer impedance Z^C1C2 for different pairs of cables arranged in a 40×40 pole–pole matrix similar to Eq. (6). Assuming that only inductive effects affect the potential measured at each channel in these calibration measurements, the mutual inductance can be computed for each electrode (cable) pair using

(7) L C 1 C 2 meas , calib = R e Z ^ C 1 C 2 j ω .

The mutual inductance thus obtained can be used to correct the actual measurements for inductive effects using Eq. (5).

4.3.3 Modelling of cable-to-cable induction

The mutual inductances LC1C2num,measured and LC1C2num,calib in Eq. (5) were computed by numerically solving the Neumann integral (Eq. 4). One basic assumption here is that the position of the short-circuit line can be determined with sufficient precision to correctly compute its effects on the measurement setup. Requirements on positions for the short-circuit line are much less strict in comparison to the measurement setup due to the large distance of all short-circuit cable elements to the original measurement setup. The numerical solution of Eq. (4) only converges if a finite distance between all cable elements is ensured (due to the 1/r singularity in the equation). Therefore we chose an arbitrary cable distance of 1 mm for the numerical representation of cables within the measurement setup. This assumption must not necessarily coincide with reality as it is contained in both LC1C2num,measured and LC1C2num,calib, and therefore any difference with the actual separation is expected to be corrected using Eq. (5). Finally, the self-inductance of the short-circuit line must be accounted for when solving the Neumann integral, as this part of the calibration setup is connected to both cables C1 and C2. This was realised by numerically replacing the short-circuit line with two lines with a distance equal to the cable radius, as discussed in Henke (2015).

4.4 Measurement configurations

The choice of measurement configurations (i.e. the set of four-point spreads) used for tomographic analysis is known to have a large impact on the resulting image resolution and data quality (e.g. Loke et al.2014, and references therein). Given that the sEIT system used here measures electrode potentials with respect to system ground, only current injections need to be specified before data acquisition. Afterwards, arbitrary four-point spreads are computed using superposition of three-point measurements, which is only limited by the available current injection dipoles. Due to the small excitation voltage of 18 Vpp (from −9 to +9 V), large dipoles skipping 20 or 21 electrodes were used for current injection. This corresponds to 5.25 m or 5.5 m distance between current electrodes. This resulted in large signal-to-noise ratios in the subsequent potential measurements. Two sets of potential dipoles were used to generate four-point data: first, for each current injection dipole all other scheduled current injection dipoles were used as potential dipoles. The resulting data set forms a complete data set (Xu and Noel1993), from which theoretically all other possible four-point combinations could be calculated by means of superposition. However, often times this approach is generally unfeasible due to the corresponding propagation of errors and the required removal of data points due to systematic errors. While our selected current dipoles ensure a high signal-to-noise ratio, a second group of potential dipoles were used to amend the tomographic data and reduce the effect of data filters on the recovered subsurface information. Here, gradient dipoles with at least 15 electrodes' distance located between the voltage electrodes were used. We note here that the concept of the complete data set and the underlying principle of superposition allows the recovery of smaller features even if only large dipole lengths are used. A classical dipole–dipole scheme was rejected after test measurements yielded inconsistent data even for small dipole separations. We attribute this observation to the fact that classical dipole–dipole schemes exhibit large decreases in signal-to-noise ratio for larger separations between current and voltage dipoles, which in turn prevents useful information recovery given our low excitation voltages.

4.5 Operating schedule and data flow

The actual operation of the sEIT measurements is controlled by a Python-based scheduling program running on the controller of the sEIT device. Therefore, operation does not rely on any additional components in the local or remote network. Daily measurements begin by conducting one ADC calibration measurement which is used to correct for amplification errors in the system. A subsequent calibration measurement of the capacitive load of the current paths is used to better estimate the true injected currents. These calibration measurements are followed by one measurement of cable capacitances used to estimate the susceptibility of the system for leakage currents. After these daily calibration measurements, tomographic sEIT measurements commence at the beginning of each full hour. With an approximate measurement time of 1.5 h, this results in one tomographic measurement every 2 h. A time window is reserved for data transfer at 12:00 each day. The length of this transfer time window is adjusted to the available internet connection speed.

Data are automatically transferred to a disk attached to a local network using a Raspberry Pi minicomputer, from where essential data are then transferred to the remote system component using the wireless broadband VPN connection. Here, all measurement data are stored in their original form on a suitably protected disk server (with backup functionality). Every 6 h, essential data are imported into an SQL database (Postgres) with subsequent automated data quality assessment (filtering) and preliminary tomographic analysis.

4.6 Data processing

In a first processing step, four-point measurements are processed with regard to the sign of the geometric factor. If the geometric factor is negative for a given configuration, the potential electrodes are swapped to obtain a positive geometric factor. This also ensures that the phase angle of the complex impedance lies in the range between π and π radians. This procedure of correcting the sign of the complex impedance values is not strictly necessary for further processing but allows for easier data analysis (i.e. histogram analysis and setting of filter criteria).

In a second processing step, the data are filtered for outliers, which is essential for tomographic inversion. We attempt to make filtering decisions based on systematic and argument-based criteria, but a large subjective component to filtering remains inevitable. Often, the filtering process is iterative with detailed analysis of individual measurements alternating with checks of the entire data set to ensure that a filter tailored to a specific case does not remove good data at another time step or frequency.

Ultimately, we used two slightly overlapping types of filters in this study. The first type represents filters derived directly from technical considerations based on the system design. In particular, this type of filtering includes the following criteria:

  • Contact resistances between current electrodes must be below 40 kΩ. This ensures that the voltage drop over the shunt resistors remains sufficiently high for an exact current measurement, and measurement errors associated with high contact resistances are kept low.

  • Resistances and apparent resistivities must be positive. Negative resistances as well as negative apparent resistivities are physically implausible for surface measurements.

  • Cable capacitance for the measurement day must be below 400 nF. This ensures reasonably low leakage currents. Too high values also indicate issues with the system that need to be resolved by maintenance.

The second type of filter relies on the basic assumption of consistency with varying frequency. We are not aware of any processes that lead to a jagged frequency response in sEIT measurements, and thus we decided to filter out all spectra that are not smoothly varying. Two examples for phase spectra that were deemed acceptable for further use are shown in Fig. 5a and b, and two examples for filtered phase spectra are shown in Fig. 5c and d. However, the definition of smooth is clearly somewhat ambiguous and arbitrary. After testing, the following filters that represent different approaches to select suitable spectra were defined (for some filters labels are defined for better reference later on):

  • Two frequencies (50 and 110 Hz) were completely removed from the data set due to suspected 50 Hz harmonic noise contamination.

  • Impedance phase angles were required to fall between ϕ>-100 mrad and ϕ<20 mrad. These values are based on histogram analyses of selected data and on our experience of what range of phase values can be expected. Small positive phase values account for the possible occurrence of the negative induced polarisation (IP) effect (e.g. Wang et al.2020a).

  • (SMOOTHNESS) A smoothness filter was applied based on an L1 norm of the spectral phase variation, and measurements were disregarded when this norm was above an empirically derived value of 3 (with phase values in milliradians and frequency value in hertz):

    (8) L 1 ϕ = 1 N - 1 i = 1 N - 1 ϕ i + 1 - ϕ i log 10 f i + 1 - log 10 f i < 3 ,

    with N the number of data points in each spectrum, ϕi the corresponding ith phase value of the spectrum and fi the ith frequency.

  • (SHIFT) A maximum change filter was applied that detects sudden jumps in the phase spectra. Here, the maximum change normalised by the log distance in frequency was used as a threshold filter (with phase values in milliradians and frequency values in hertz):

    (9) MAX i = 1 N - 1 ϕ i + 1 - ϕ i log 10 f i + 1 - log 10 f i < 9.5 .

    The used threshold value of 9.5 was again determined empirically by inspection of the spectra.

  • (NR_DATA) After application of all filters, only those spectra were retained which had more than 85 % of the original frequency data points left. This filter was especially important to produce consistent data sets.

Figure 5(a, b) Examples of phase spectra that were deemed acceptable for further use with regard to the smoothness criterion. (c, d) Examples of phase spectra that violate the smoothness criterion. Note that the measurements at 50 and 110 Hz were already removed.


Figure 6Number of data points retained for 1 Hz after application of all filters denoted with corresponding labels in the text. The specific nature of the filters is explained in the text; “system filters” refers to all system-specific filters.


The number of data points retained after filtering is shown in Fig. 6 for all time steps of the growing season 2018. It can be seen that the smoothness filter is the only filter that changes its effects significantly over time. Also, we expect some degree of redundancy in the data filters, which has not been investigated in detail. Adding further to this it is important to realise that the large number of applied filters should not necessarily be equated with bad data quality. The nature of sEIT systems that measure with respect to the system ground potential enables the computation of a large number of electrode configurations after actual data acquisition, and the filters are here not only used to remove bad, noise-affected data points but also as a means to select data points for inversion out of the many possible combinations. Please also note that most of the time the specific choice of filter parameters does not impact the majority of results and most of the time the filter parameters presented here were the results of optimising specific data sets with regard to consistency towards space and time. Nonetheless we acknowledge that future analyses should aim to reduce the number of filtering parameters.

Using the 40 current injections specified before the measurements, 1650 four-point measurement configurations were initially generated from the three-point measurements. After applying the various filters to all time steps only 993 unique measurement configurations were still present in at least one of the filtered data sets analysed for 2018, with the individual number of retained configurations per individual measurement varying (blue area in Fig. 6). After filtering, the 993 remaining configurations had a mean geometric factor of 6.66 m, with a minimum of 0.82 m and a maximum of 135.62 m. While no in-depth resolution analysis of individual inversions was conducted, the cumulated sensitivity (coverage) was used as a first-order image appraisal tool (Sect. S1 in the Supplement). The coverage exhibits a homogeneous spatial distribution below the electrodes down to 1.2 m depth (Fig. S1a). Also, despite changes in the number of filtered data points (Fig. 6), the temporal evolution of the mean spatial coverage shows no large deviations over time (Fig. S1b).

No analysis of normal–reciprocal pairs was performed in this study given that only 40 injections were conducted, thus limiting the maximum number of available normal–reciprocal pairs with useful signal-to-noise ratios. The small number of current injections reduced the required measurement time for individual tomographic data sets and thus allowed for relatively fast acquisition while still providing an acceptable number of impedance measurements because of the measurement-to-ground nature of the system.

4.7 Data inversion

Inversions were performed for each frequency independently up to 1 kHz. While proper error estimation helps to prevent overfitting, in reality it is often difficult to estimate the errors, and as such heuristics are commonly employed to define measurement errors. In this study, the results of the non-linear least-squares inversions were assessed using the normalised root mean square (rms) error, which indicates to which degree the measurements are predicted by the inverted model (e.g. Kemna2000). It is common to only consider inversion results with rms values close to 1, indicating a fit of the measurements within their uncertainty. To find consistent data error estimates, based on a data error model, without the use of normal–reciprocal measurements, a systematic parameter search was conducted for each individual data set. We found that an impedance magnitude error model parameterised as Δ|Z^|=0.0005|Z^|+0.05Ω yielded suitable resistivity magnitude results with rms values near 1 for the entire monitoring period, indicating that an absolute error dominated the resistivity magnitude data. However, no single absolute phase error estimate yielded suitable phase rms values for the entire measurement period. Therefore, a different approach was used. Based on the assumption that the phase error is dominated by an absolute error value, inversions for all frequencies and all time steps were conducted for absolute phase error estimates between 0.1 and 1.3 mrad in 0.1 mrad increments. A small relative error of 0.5 % of a given phase value was also added, although its impact on the results was not investigated in detail. In the following, phase inversion results for each pixel were computed as the median phase value of all inversion results yielding rms values between 0.95 and 1.05. Despite limiting the analysed results to appropriate rms values, sometimes those results still included artefacts or overly smooth images, and taking the median pixel values attempts to reduce any impact of these unwanted results.

4.8 Temperature correction

Complex conductivity distributions obtained through inversion are approximately corrected for temperature variations following the commonly used approach described in Hayley et al. (2007) (see also Sen and Goode1992; Hayashi2004). In this approach, the complex conductivity σ^ of each inversion cell and frequency is corrected using

(10) σ ^ corr = m ( T ref - 25 ) + 1 m ( T - 25 ) + 1 σ ^ ,

where σ^corr is the temperature-corrected complex conductivity, m is a parameter set to 0.02 indicating a temperature change of 2 % per degree Celsius, Tref=19.9C is the reference temperature used for correction and T is the actual temperature in C. The reference temperature is chosen as the median temperature observed for the growing season 2018 across all sensors, and actual temperatures are gathered from temporally and 2D spatially linearly interpolated soil temperature data.

Equation (10) assumes that the temperature acts equally on the real and imaginary part of the electrical conductivity. Several studies have provided evidence that both the real and imaginary parts show a linear dependence on temperature (e.g. Binley et al.2010; Zisser et al.2010; Bairlein et al.2016). Yet, these studies also indicated that this linear dependence could depend on frequency if distinct polarisation peaks are present. Given that no prominent large polarisation peaks were observed in this study, we assume that the relatively simple correction according to Eq. (10) is sufficient. However, temperature correction remains challenging especially for field studies and should be addressed in more detail in future studies.

5 Results

This section presents results gathered during the operation of the system in the years 2017 and 2018. The aim of presenting these results, and the subsequent discussion, is to explain the observed system behaviour and show that consistent results can be recovered from the system as presented. The biological analysis and data interpretation is left for further studies.

5.1 Operating history

The initial system was installed in April 2017, and monitoring started on 5 May 2017. The monitoring was stopped on 19 September 2018. The growing season 2017 and the following winter were used to test and improve the operation of the system and to identify relevant factors for obtaining accurate wideband sEIT monitoring data. This test period consisted of 2970 tomographic sEIT measurements. After analysis, it was concluded that these initial data were not of sufficient quality for reasons explained later. The electrode and cable layout was modified at the beginning of April 2018. After this change in design, 1769 sEIT measurements were conducted in the growing season 2018 (an average of 11 daily measurements). The average daily data volume ranged from 5 to 9 Gb, depending on the measurement schedule that was occasionally adapted to accommodate available upload bandwidth and maintenance times.

5.2 Inductive calibration measurements

The measurement setup was retrospectively calibrated for mutual induction effects in the summer of 2020. This was possible because the setup including the cable layout was unchanged since April 2018. The pole–pole matrix obtained from the calibration measurements is shown in Fig. 7a. Unfortunately, six electrode cables were damaged by animals after the monitoring ended in 2018. Therefore, a spatial linear interpolation of the measured data was used to fill in the missing data to obtain a full pole–pole matrix of mutual inductances. The measured pole–pole matrix shows that variation in mutual inductance between cables occurred in groups of eight (Fig. 7a). We attribute this to the fact that the cables were tightly fit together with cable ties in bundles of eight, thereby decreasing the distance to each other and causing increased mutual inductances. Next, the mutual inductances were calculated for the calibration setup (Fig. 7b) and the measurement setup (Fig. 7c) using Eq. (4). In a final step, the pole–pole matrix used to correct the measured impedances was obtained using Eq. (5) (Fig. 7d). A comparison of Fig. 7a and b shows that the simulation of the calibration setup captures the overall structure of the measured pole–pole matrix well but that details are lacking because of insufficient knowledge about the actual positions of the cables.

Figure 7(a) Pole–pole matrix of the inductive calibration measurements. Missing electrode rows and columns were filled with a 2D linear interpolation. (b) Result of numerical simulation of calibration setup. (c) Result of numerical simulation of the measurement setup. (d) Final pole–pole matrix computed from calibration measurements and numerical simulations using Eq. (5).


Figure 8Effect of correction of inductive coupling for two spectra of imaginary parts of the transfer resistance, Z′′. (a) Least affected spectrum measured on 16 June 2018 (11:00 UTC) (b) Most affected spectrum measured on 16 June 2018 (11:00 UTC).


The effect of the correction for inductive coupling varies strongly between four-point configurations. Figure 8 presents the changes in SIP spectra for two configurations associated with the smallest and largest change in the imaginary part of the transfer impedance, Z′′, due to the correction for inductive coupling for selected measurement data. The data set was selected because it showed the smallest mean impedance values (for both real and imaginary parts) and thus the potentially strongest effects of inductive coupling (refer to Eq. 2). The spectrum that is not much influenced by inductive coupling only shows differences above 1 kHz after calibration (Fig. 8a). Yet, there is some potential for misinterpretation of the uncorrected data as the spectrum shows a peak at 2 kHz that is removed by the inductive correction procedure. The second spectrum shows physically implausible behaviour at higher frequencies above 100 Hz with a sign change in Z′′ (Fig. 8b). The inductive correction corrects this behaviour, thereby increasing the usable frequency range into the kilohertz region.

5.3 Continuous assessment of data quality

Contact resistances for each current injection were automatically determined, allowing a detailed assessment of the temporal dynamics of the contact resistances. The mean contact resistance for all current injections along with the minimum and maximum values are presented in Fig. 9. The contact resistances showed a strong temporal and spatial variation in summer 2017 and stabilised with the beginning of the winter season with only a gradual increase until February 2018. After the redesign of the electrode and cable setup in March 2018, the contact resistances showed much less variation until a sharp increase in variation was observed in late summer again.

Figure 9Evolution of mean contact resistances for all current injections at 1 kHz. Grey areas indicate minimum and maximum ranges.


Contact resistances are dominated by the interface resistance between electrode and soil, and changes in soil properties are typically not considered to be a major factor. The observed behaviour of the contact resistances thus suggests that the electrode contact to the soil varied considerably in 2017, probably due to the shallow penetration depth. The upper few centimetres of soil are subjected to cycles of wetting and drying, which may lead to swelling and shrinking and other mechanical changes in the top layer. During the redesign, the active part of the electrode was inserted deeper into the soil. This strongly reduced the variability in the soil–electrode contact, probably due to reduced variation in soil water content and temperature as well as more homogeneous soil structure. Finally, at the end of the growing season of 2018 the variability and maximum values of the contact resistances increased again. One possible explanation could be progressive loss of electrode contact with the soil, associated with increased random resistance fluctuations at the metal–soil interface. However, measurements in 2018 were terminated by equipment failure, and as discussed below these highly variable contact resistances most probably also reflect unreliable measurements.

Figure 10(a) Evolution of daily mean cable capacitances at 1 kHz. (b) Evolution of ratio between symmetric injection current and leakage current, Is/Il, at 1 kHz. Dark grey areas indicate the range between minimum and maximum values, and the hatched area indicates the time span in which measurements were conducted with the initial electrode and cable setup.


In addition to contact resistances, cable capacitances with respect to ground were also monitored on a daily basis. They showed a strong variation around a mean value of 100 nF in 2017 (Fig. 10a). Such large cable capacitances negatively affect the accuracy of the sEIT measurements, as for example discussed in Zimmermann et al. (2019). In particular, high cable capacitances are associated with leakage currents that lead to an asymmetric current flow in the system as well as additional current flow paths in the subsurface associated with the cable shielding. In principle, these effects can be accounted for in the finite-element (FE) modelling during the inversion, although this requires estimates of the distribution of the cable capacitances as well as extended forward modelling routines (e.g. Zimmermann et al.2019). As with all correction and modelling procedures, some uncertainty remains after correction. Therefore, it is desirable to reduce the cable capacitances and the associated leakage currents to the extent possible.

After the redesign in 2018, the capacitances were much lower and typically stable below 10 nF (Fig. 10a). We attribute this not only to the increased distance of the cables to the subsurface but also to the weather proofing using rain gutters, which prevented water from intruding into the cable bundles and thus from changing the dielectric properties between the cables. The success of these measures can be seen in the ratio between symmetric excitation current Is and leakage current Il, which increased and stabilised considerably after the redesign (Fig. 10b). It is interesting to note that the time span near the end, associated with increased variability in contact resistances, also exhibits higher measured cable capacitances and very small ratios of symmetric to leakage currents. We interpret these very low ratios of the currents as the onset of the equipment failure that ultimately led to the termination of measurements. While low fractions of leakage currents could possibly be dealt with using suitable modelling software, leakage currents in the same order of magnitude as the symmetric currents are a clear sign of unreliable equipment and measurements.

The observed improvements in the contact resistances and the cable capacitances correlated well with an improved behaviour of individual SIP spectra. Figure 11 shows the temporal evolution of one selected measurement configuration divided into two time periods coinciding with the two build stages of the setup. Spurious data at the end of the monitoring period associated with the failure of the equipment were excluded. The first time period exhibits quite erratic polarisation signatures with both usable and unusable SIP spectra, which is associated with variable contact resistances and leakage currents. The second time period starting after the redesign shows smooth and consistent SIP spectra. This highlights that low contact resistances and leakage currents are important for good data quality. However, it can also be seen that some useful measurements were obtained in the presence of higher contact resistances and leakage currents.

Figure 11Raw phase spectra for the electrode configuration a=1, b=20, m=3, n=22 between 23 July 2017 and 5 September 2018. (a) Spectra measured using the first electrode and cable setup. (b) Spectra measured using the second, improved, electrode and cable setup. Measurements are not corrected for inductive effects.


5.4 sEIT imaging results

As discussed in Sect. 4.7 a parameter search for absolute phase errors was conducted for each data set and assessed using the normalised phase rms. The normalised phase rms values, computed for the final inversion steps of each data set, are shown in Fig. 12 for 1 Hz and 1 kHz for the 2018 growing season and for different choices of the absolute phase measurement error Δϕ. For both frequencies, a distinct change over time is observed for the rms values for different absolute phase data error estimates. This indicates a systematic temporal change in the noise characteristics of the data. However, there is an absolute phase error region between 0.3 and 0.9 mrad with rms values near 1 for almost all times. The median values of all inversions with rms values near 1 were used for further analysis. We also found that results for a phase error of 0.8 mrad showed very similar overall behaviour as the median results. Therefore, we occasionally also present results for this phase error in cases where extracting and computing the median results was too time-consuming.

Figure 12Normalised rms error for the phase for the final iteration throughout the growing season 2018 for (a) 1 Hz and (b) 1 kHz for different levels of absolute phase measurement error Δϕ. Please note that the normalised rms values for the magnitude are not shown.


Figure 13Temperature-corrected tomographic results for two time steps and selected frequencies. Left column: 1 May 2018. Right column: 1 August 2018. The inverted values are median values of all inversions in a 24 h interval around the target time with rms values between 0.95 and 1.05. Note that the colour-bar limits vary for different frequencies.


Exemplary inversion results for selected frequencies are presented in Fig. 13 for 1 d in May and 1 d in August 2018. We observed higher resistivity values in August compared to May. While a detailed interpretation is beyond the scope of this paper, this is consistent with the increasing drying of the soil during the low-precipitation summer of 2018. The resistivity magnitude for August 2018 (Fig. 13b) showed small-scale variability near the surface, sometimes consistent with high-phase anomalies. Analysis of these features showed that they are consistently present in certain time periods, and their position roughly corresponds to the position of the transparent plastic tubes embedded into the soil for optical root observations (for additional information on these tubes, we refer to Cai et al.2016). Additional possible explanations include selective drying and heterogeneity that cannot be properly modelled using the electrical forward model with the chosen mesh discretisation. In this study a 2.5D modelling approach is employed which assumes a constant resistivity distribution perpendicular to the xz plane shown in the tomograms. While the measurements were conducted on a controlled experimental field, we can still expect some occasional violation of this assumption in our experiments given the agricultural setting in an open environment with heterogeneous plant growth and density and the associated heterogeneous drying patterns. The electrode array was located 2.4 and 4.6 m away from the borders of the test field, respectively. This suggests that border effects can be neglected as an explanation of modelling errors.

Figure 14Intrinsic spectra extracted from tomographic analyses of all frequencies (August 2018). Labels denote the (x/z) position in the tomogram where the spectra were extracted. The spectra represent the median values of all inversions in a 24 h interval around the target time considering all inversion results with rms values between 0.95 and 1.05.


The phase values generally show a smooth spatial distribution up to 1 kHz, but a distinct frequency dependence is apparent for higher frequencies (Fig. 13c–j). The shallow anomalies discussed for resistivity results are also present, indicating that the underlying cause acts on both resistivity magnitude and phase. Spectral consistency of the imaging results becomes clearer in the intrinsic spectra recovered from the inversion results (Fig. 14; see also the additional time steps shown in Sect. S2). Here, it needs to be emphasised again that the inversions were conducted separately for each frequency. Thus, the smooth intrinsic spectra indicate a consistent convergence behaviour of the inversions for different frequencies for both resistivity magnitude and phase, supporting the data quality assessment and data filters introduced previously. No attempt to interpret the phase value further than noting their consistency across frequencies is done here, and the interpretation of the phase values with regard to plant-based structures or processes is left to future studies.

Figure 15Temporal long-term development of the complex resistivity for the central region of the profile (3.25–6.5 m) for different depths. The electrical data points are median values of all pixels within a ±5 cm range around the stated depth and all inversions in a 24 h interval around the target time considering all inversion results with rms values between 0.95 and 1.05. (a) Precipitation during the season 2018. Plotted is a rolling cumulative sum over 24 h intervals. (b) Temporal development of resistivity magnitude at 1 Hz. (c) Temporal development of resistivity phase at 1 Hz. (d) Temporal development of resistivity phase at 1 kHz.


Finally, Fig. 15b–d present the temporal development of the complex resistivity at different depths of the central region of the tomograms (x[3.25,6.5] m). This region was selected because it is associated with the highest resolution for our electrode layout. The time series for both magnitude and phase at 1 Hz and phase at 1 kHz show consistent variation over time for different depths. It is interesting to note that the phase values at 1 Hz and at 1 kHz show different temporal dynamics, hinting at a wide variety of complementary information contained in these inversion results.

Phase values deeper in the soil (>0.5 m depth) at 1 kHz show a distinct minimum roughly at the beginning of July (Fig. 15d). While a detailed discussion of processes leading to this behaviour is beyond the scope of this study, we speculate that these low phase values are at least partially caused by inductive coupling effects that were not completely corrected. The information for the larger depths of the tomograms stems from measurement configurations with larger geometric factors and thus smaller signal-to-noise ratios, which are more susceptible to inductive coupling. This hypothesis is supported by results obtained without correction for inductive coupling (Fig. S3d), where this minimum in phase is even more pronounced and even reaches physically implausible positive values.

Overall, it is found that three primary factors control the quality and consistency of the inversions results in this study: the choice of error estimates, data filtering and the inductive correction for high frequencies. While we are confident that our choices and procedures for each of these factors lead to robust and consistent results, we nonetheless note here that the qualitative behaviour of the results does not change in case of different choices. For example, the use of a relative phase error model, Δϕ=ãϕ+b̃, provided similar inversion results (Fig. S4). The results also showed similar temporal and spatial behaviour if only measurement configurations are used that are present in 80 % of all time steps (Fig. S5).

6 Discussion

6.1 Technical aspects of the monitoring system

Our experience in setting up and maintaining an sEIT monitoring system highlights the complexity of this endeavour. While sEIT measurements in a laboratory setting are already challenging, applying this method to an even more complex and unsheltered field setting requires attention to many aspects to produce multi-dimensional electrical impedance data sets that are of sufficient quality. Probably the most important aspect during operation was the monitoring of system health parameters such as contact resistances and cable capacitances with associated leakage currents. Monitoring and analysis of these parameters led us to redesign the electrode and cable installations, thereby improving the overall quality of measured data substantially. We anticipate that with time, when critical thresholds are better known for the system and specific field site, these health parameter checks could be directly integrated into the monitoring pipeline and would allow for near-real time intervention in case of decreasing data quality. Possible interventions could include fixing systematic or transient problems such as emerging short circuits or water ingress into the system as well as adapting shunt resistances and applied voltages to the measurement environment to improve data quality.

The results of this study also highlight that sEIT measurements cannot fully be treated in the quasi-static domain in which electromagnetic induction effects can simply be ignored. The extended correction procedure for mutual cable inductance effects developed in this study significantly improves high-frequency data consistency, as shown in Fig. 8. We also found that data quality is acceptable up to 1 kHz based on raw data inspection (Fig. 11), inversion results (Fig. 13) and extracted intrinsic signatures (Fig. 14). Based on this finding, it seems prudent to evaluate inductive correction effects also for other frequency-domain measurement devices, which would provide an alternative avenue of action for measurement scenarios where cable layouts cannot be optimised with respect to induction effects (e.g. Schmutz et al.2014).

The monitoring and continuous measurement of cable capacitances to ground with associated leakage currents (Fig. 10) also provided important information that led us to redesign the setup. This reduced the impact of capacitive coupling to a degree where it was not deemed necessary anymore to implement an explicit treatment of leakage capacitances and currents into the modelling and inversion framework, which is the alternative approach discussed in Zhao et al. (2013) and Zimmermann et al. (2019).

The measurement system was originally conceived as a laboratory system, and technical choices restrict the maximum excitation voltage against ground to ±10 V. While this aspect limits the injected current, and thus the attainable signal-to-noise ratio for field applications, it allows us to operate the system without additional stringent security measures in field monitoring experiments. The low attainable signal strength leads to the use of non-standard measurement configurations with small geometric factors, for which good signal-to-noise characteristics are favoured over optimal resolution. Increasing the excitation voltages would be desirable for field applications on larger scales, but this is not trivially accomplished using the presented system. Alternative measurement hardware would need to replace the existing hardware in order to measure with larger excitation voltages, thereby requiring re-evaluation and re-characterisation of the new measurement system.

The large data sets generated by monitoring systems such as the one described in this study inevitably require a highly iterative workflow because processing often needs to be adapted when data are synthesised to address specific scientific questions. In retrospect, the use of a relational database helped tremendously in reducing the time it took to implement changes in the processing structure and create new analysis steps, as the structure of the database allows for flexible data queries over large amounts of data. This flexibility is not present in traditional workflows in which data are often kept in separate files, and experience has shown that repeating processing steps without such a database is so time-consuming that it becomes a bottleneck for scientific progress.

Geophysical measurements are rarely used in isolation, and thus other measurements must be scheduled to coincide with them if various data sets are to be combined and compared. The use of the presented semi-automated measurement system simplifies the integration of sEIT measurements in existing research efforts, for example in agricultural research, and may ultimately lead to the integration of the system into decision making processes. Capturing temporally and spatially resolved monitoring data also enables the analysis of active processes in the subsurface, provided that they can be captured with suitable time resolution. With an estimated measurement interval of 2–3 h, we can thus expect to resolve processes with periods of 4–6 h under optimal conditions. Yet, at this point no concerted effort was undertaken to optimise measurement operations for smaller measurement intervals. Given the ample literature on the optimisation of measurement configurations (e.g. Wilkinson et al.2006), we see considerable room for improvement with regard to capturing faster processes.

6.2 Future developments

The sEIT monitoring system presented in this study is based on a laboratory design aimed at optimal measurement accuracy and precision but was not designed for ruggedness or large-scale applications. As also mentioned by Slater and Binley (2021), efforts have only recently started to design electrical measurement systems specifically for the task of long-term operation with fixed setups. The adaption of the current sEIT measurements for robust long-term monitoring applications over months and years will require improving system resilience to harsh environments. This includes high humidity and large temperature dynamics. To a certain degree physical protection against vibrations and harsh handling could improve long-term usage and system installation and reliability. From an operational point of view, an integration with other environmental sensors is desirable. This would allow the system to react to external triggers such as extreme weather events or in response to temperature variations.

Another important point that will need to be addressed is the choice of electrode type. Steel electrodes were used here because they are relatively stable in time. However, even steel electrodes will chemically age due to corrosion and other chemical processes, and we also expect some degree of electrode polarisation at low frequencies when the electrode spacing is small. Therefore, future research should be directed towards finding suitable electrodes for long-term sEIT measurements. While electrodes used for self-potential measurements could be evaluated (e.g. Petiau2000), they have a high interface impedance that hinders current injection, which is problematic for a system with low excitation voltages.

A major factor influencing tomographic inversion of electrical data sets is the choice of measurement configurations and their error parameters. The information content of a given set of measurement configurations depends on their level of completeness (e.g. Xu and Noel1993) and on their signal-to-noise ratios. Correspondingly, future efforts should be aimed towards finding robust configurations that optimise these two characteristics with regard to the goals of a given survey. Robust measurement configurations would still yield reliable and near-optimal resolution characteristics even if a certain number of data must be disregarded (filtered) as outliers.

While there have been investigations into the nature of data errors both for magnitude (e.g. LaBrecque et al.1996; Koestel et al.2008) and phase (e.g. Flores Orozco et al.2012b), there is still considerable uncertainty in our knowledge of the specific error sources and how to deal with them. With respect to phase error estimates, two major phase error models have been used in the past, and it is still not clear which one should be favoured. Some studies have used absolute phase errors for their data (as we did in this study), implying that the phase errors do not strongly depend on overall signal strength (e.g. Kemna2000; Flores-Orozco et al.2020). However, some studies using normal–reciprocal analysis have suggested a power-law dependency on resistance, Δϕ=R-b (e.g. Flores Orozco et al.2012b). Future work should therefore also be directed towards finding robust and, more importantly, consistent procedures to analyse electrical impedance monitoring data without relying on normal–reciprocal measurement for error quantification, as these additional measurements are often too time-consuming to conduct for sEIT measurements. Also, normal–reciprocal error analysis should only be attempted for measurement configurations where both current and voltage dipoles have the same length to ensure similar noise characteristics for both measurements.

Directly associated with the problem of choosing suitable measurement configurations and error parameters is the need to better quantify uncertainties in the resulting data sets. While first-order uncertainty estimates can be obtained by looking at the cumulated sensitivity distribution of measurement configurations using numerical simulations for multi-frequency impedance imaging (e.g. Weigand et al.2017), additional image assessment tools should be employed and adapted for a more robust uncertainty quantification in sEIT imaging results. One of these tools could be the use of stochastic inversion frameworks, which have recently been established for direct-current (DC) geo-electrics (e.g. Galetti and Curtis2018).

The inversion of multi-dimensional sEIT data involves a large parameter space that makes it hard to obtain robust and consistent results. Therefore, future work should aim to further improve the temporal and spectral consistency of the inversion results, for example by applying smoothness constraints along the spectral dimension (e.g. Kemna et al.2014; Günther and Martin2016). Alternatively, the careful integration of sEIT data in structural or process-based models could decrease the size of the parameter space to improve the consistency of the inversion results.

7 Conclusions

In this study, we presented a semi-automatic sEIT monitoring system aimed at the small field scale. Multiple data quality parameters such as contact resistances, cable capacitances and resulting leakage currents were routinely monitored along with the actual sEIT measurements. By analysing these quality parameters, significant improvements in system reliability and imaging quality could be achieved, for example by adapting measurement configurations, by decreasing cable-to-soil coupling and by improving data filtering before tomographic analysis. Additionally, inductive coupling effects between cables were corrected using a novel procedure that combines numerical modelling and calibration measurements, leading to reliable data up to 1 kHz. We conclude that data quality control should be an integral part of sEIT monitoring activities and special attention should be given to capacitive and inductive coupling effects and their potential remediation. With suitable knowledge of the internal workings of other sEIT systems, methods for correcting inductive coupling effects should be applicable also to other systems. The achieved data quality, consistency and spectral bandwidth over the time span of multiple months, with multiple measurements per day, signifies an important step in establishing the sEIT method as a suitable monitoring tool not only for near-surface geophysical but also for biogeophysical applications.

Code and data availability

Scripts and data to reproduce all images presented in this study can be accessed under the following doi: (Weigand et al.2022).

The meteorological data that were obtained from a climate station located in Selhausen (Germany) are freely available on the TERENO data portal (, Luecke et al.2020).


The supplement related to this article is available online at:

Author contributions

AK, EZ and JAH initiated planning and funding of the research. AK, EZ, SH and MW planned the technical realisation of the monitoring system. EZ and MW installed and operated the system. EZ, MW and VM planned and conducted the inductive calibration measurements. All authors discussed the results and contributed to the paper.

Competing interests

The contact author has declared that none of the authors has any competing interests.


Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.


This work was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy – EXC-2070 – 390732324 – PhenoRob, and the SFB/TR32 “Patterns in Soil-Vegetation-Atmosphere Systems: monitoring, modelling, and data assimilation”. The rhizotron facility is supported by TERENO (Terrestrial Environmental Observations) funded by the Helmholtz-Gemeinschaft. We are grateful to Walter Glaas for ongoing technical support for the sEIT monitoring system and Andrea Schnepf, Anja Klotzsche, Normen Hermes and Dino Schmitz for their support with the maintenance of the rhizotron facility. We also thank Andreas Dreist for technical support and maintenance of the processing and archiving facilities at the University of Bonn.

Financial support

This research has been supported by the Deutsche Forschungsgemeinschaft (grant nos. EXC-2070 – 390732324 – PhenoRob and SFB/TR32).

This open-access publication was funded by the University of Bonn.

Review statement

This paper was edited by Ciro Apollonio and reviewed by Andrew Binley and one anonymous referee.


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Short summary
The construction, operation and analysis of a spectral electrical impedance tomography (sEIT) field monitoring setup with high spatial and temporal resolution are presented. Electromagnetic induction errors are corrected, allowing the recovery of images of in-phase conductivity and electrical polarisation of up to 1 kHz.